Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M13
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 31 0.81
02_05_0040 + 25341418-25341810 31 0.81
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405 29 1.9
03_03_0089 + 14359650-14359889,14360859-14361120,14361633-143618... 29 1.9
11_05_0013 + 18383235-18383702,18385570-18386571 29 3.3
06_02_0011 - 10569471-10572245 29 3.3
07_01_0862 - 7172083-7172931 28 5.7
05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350... 28 5.7
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 28 5.7
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 28 5.7
12_02_0643 - 21461123-21461902 27 7.5
12_02_0303 + 17106482-17107261 27 10.0
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 27 10.0
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 27 10.0
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 30.7 bits (66), Expect = 0.81
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 208 YRRNSSRLRTHGPARNAVTPPRRCEPALTRCGGKRSLAP 324
+ R S R R+ PAR+ +PPRR P R +RS AP
Sbjct: 217 HSRRSGRSRSRSPARDRGSPPRRRSPPARR---ERSPAP 252
>02_05_0040 + 25341418-25341810
Length = 130
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 205 PYRR-NSSRLRTHGPARNAVTPPRRCEPALTRCGGKR 312
P RR S+ R GP R P RRC RCG R
Sbjct: 78 PRRRCGGSKRRCSGPQRRRGAPRRRCSGPQLRCGAPR 114
>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
Length = 488
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 354 RTPRPVSLRTRSKRPLPP 301
R RP++L +SKRPLPP
Sbjct: 8 RVRRPITLNPKSKRPLPP 25
>03_03_0089 +
14359650-14359889,14360859-14361120,14361633-14361813,
14362141-14362288,14362836-14363040,14363304-14363362
Length = 364
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 230 SRDEFRLYGGVVLPQREPQPQPGVFEIGTTLLCGQVEAAVVDRPSRAILEILLGDGPDVH 51
SR R+ G + EP P+PGV + + L + A +RAI G PDV+
Sbjct: 159 SRIGIRMLIGQHVALHEPDPEPGVIGLISKRLSPMLVAQHATEDARAICMREYGSAPDVN 218
>11_05_0013 + 18383235-18383702,18385570-18386571
Length = 489
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -2
Query: 410 ADVRKQLLPLAXXXXXXXXXXXXRYRCAHGASDRFPPHRVSAGSHLLGGVTAFLAGPCVR 231
AD +L+ A A G R PP +A L+GG+ F+ GP
Sbjct: 4 ADPNHRLIAGAALLVATLAFIKLLLSSAGGGKKRLPPTIPAAP--LVGGLLRFMRGPIPM 61
Query: 230 SRDEFRLYGGV 198
R+E+ G V
Sbjct: 62 IREEYARLGSV 72
>06_02_0011 - 10569471-10572245
Length = 924
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 275 LLGGVTAFLAGPCVRSRDEFRLYGGVV 195
LLG +TAF AG C R R +YG V+
Sbjct: 854 LLGLMTAFAAGSCRRFRTSVYVYGLVI 880
>07_01_0862 - 7172083-7172931
Length = 282
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 366 PERKRTPRPVSLRTRSKRPLPP 301
PE++ TP P L K+PLPP
Sbjct: 195 PEKENTPLPPLLLPPKKKPLPP 216
>05_07_0246 +
28634530-28634735,28634841-28634901,28634996-28635088,
28635326-28635391,28635506-28635576,28636225-28636329,
28637065-28637134
Length = 223
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 322 EQATASPHTGSAPARIFLAA*PHSSQDHASAAVMNSVCTAASCCRNGN 179
E+A A+P G APA L P D + + + S C+ GN
Sbjct: 7 EEAAATPGAGGAPAAGRLKGCPELMVDDDMREMAKTAAWSVSSCKPGN 54
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 208 YRRNSSRLRTHGPARNAVTPPRRCE 282
+ R S R R+ PAR+ +PPRR E
Sbjct: 10 HSRRSGRSRSRSPARDRGSPPRRRE 34
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 116 AVVDRPSRAILEILLGDGPDVHAPRVAAPLL 24
A V +P A++E LGD PD R+AA L
Sbjct: 226 AGVLQPEDAVVERALGDAPDTELTRLAADYL 256
>12_02_0643 - 21461123-21461902
Length = 259
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 375 TSRPERKRTPRPVSLRTRSKRPLPPTP 295
T PER+ +P P LR R + P PP P
Sbjct: 203 TPPPERRESPSP--LRGRPRTPPPPRP 227
>12_02_0303 + 17106482-17107261
Length = 259
Score = 27.1 bits (57), Expect = 10.0
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 9 RLDPVEERRSDSGGVYIGTV-AEQYLEYRATRTINYGRLNLTAEQRCPDLEDAGLRLRFP 185
RL PV ER D GG T +E+ AT L E P+ E RL
Sbjct: 145 RLLPVGERDLDGGGEATTTERVVTVVEFLATFQGMEAELEADMEAMGPEHE----RL--- 197
Query: 186 LRQHDAAVQTEFITAA 233
LR+HDAAV E AA
Sbjct: 198 LRRHDAAVGAELAEAA 213
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 253 SSQDHASAAVMNSVCTAASCCRNG 182
++QDH+S+ VM +SCC G
Sbjct: 478 TAQDHSSSGVMTDGNNCSSCCNAG 501
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 366 PERKRTPRPVSLRTRSKRPLPPTPGQRR 283
P R R PR + R + P PP P Q R
Sbjct: 36 PRRTRLPRACNSRPKVPPPPPPPPRQER 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,671
Number of Sequences: 37544
Number of extensions: 224078
Number of successful extensions: 1144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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