Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M12
(525 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotei... 173 2e-42
UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 162 5e-39
UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole geno... 155 8e-37
UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like... 150 2e-35
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 126 2e-28
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 116 3e-25
UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotei... 110 2e-23
UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 105 6e-22
UniRef50_Q2H8N5 Cluster: Predicted protein; n=1; Chaetomium glob... 101 8e-21
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 86 4e-16
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 78 1e-13
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 67 2e-10
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 66 6e-10
UniRef50_Q94B79 Cluster: Small nuclear ribonucleoprotein-like pr... 65 1e-09
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 64 2e-09
UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n... 63 3e-09
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 50 3e-05
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 50 3e-05
UniRef50_Q29329 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 50 3e-05
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 49 6e-05
UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1; Bab... 48 1e-04
UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria pa... 47 3e-04
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 46 4e-04
UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to ENSANGP000... 45 0.001
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 45 0.001
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 44 0.002
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 44 0.002
UniRef50_UPI00003C0461 Cluster: PREDICTED: similar to CG12924-PA... 44 0.003
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 43 0.004
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 43 0.005
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 40 0.026
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 40 0.026
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 40 0.046
UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, wh... 38 0.11
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.14
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 38 0.19
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.25
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 37 0.33
UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein NCU095... 36 0.43
UniRef50_Q7PT02 Cluster: ENSANGP00000018479; n=1; Anopheles gamb... 36 0.75
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 36 0.75
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 35 1.00
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 35 1.00
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 35 1.3
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 34 1.7
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 34 1.7
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 33 3.0
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 3.0
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 33 4.0
UniRef50_Q4DRB4 Cluster: Putative uncharacterized protein; n=2; ... 33 5.3
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 32 7.0
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 32 7.0
UniRef50_O85133 Cluster: Flagellar biosynthetic protein fliP; n=... 32 7.0
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 32 9.3
UniRef50_Q6U1T1 Cluster: Long chain fatty acid synthetase; n=3; ... 32 9.3
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 32 9.3
UniRef50_A5K4Q4 Cluster: LSM domain containing protein; n=4; Pla... 32 9.3
UniRef50_Q59N02 Cluster: Putative uncharacterized protein; n=1; ... 32 9.3
>UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotein
Sm D2; n=32; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D2 - Drosophila melanogaster (Fruit
fly)
Length = 119
Score = 173 bits (422), Expect = 2e-42
Identities = 87/114 (76%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Frame = +1
Query: 61 KPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 240
KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM
Sbjct: 5 KPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 64
Query: 241 VLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLATAAG 399
VLENVKEMWTE+PRT VNKD+FISKMFLRGDSVILVLRNPLATAAG
Sbjct: 65 VLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATAAG 118
>UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Homo sapiens (Human)
Length = 118
Score = 162 bits (393), Expect = 5e-39
Identities = 80/114 (70%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Frame = +1
Query: 46 MATTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 225
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 226 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPL 384
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 170
Score = 155 bits (375), Expect = 8e-37
Identities = 74/90 (82%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +1
Query: 115 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 291
FSTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVP+T
Sbjct: 80 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 139
Query: 292 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 381
VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 140 KKKANPVNKDRFISKMFLRGDSVIIVLRNP 169
>UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like
protein; n=5; Eukaryota|Rep: Small nuclear
ribonucleoprotein D2-like protein - Ostreococcus tauri
Length = 103
Score = 150 bits (363), Expect = 2e-35
Identities = 72/90 (80%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
Frame = +1
Query: 115 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 291
F+TGPLSVLT SVK NTQVLINCRNN+KLL RVKAFDRHCNMVLENVKE+WTEVP+T
Sbjct: 13 FTTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKG 72
Query: 292 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 381
VNKD+F+SKMFLRGDSVILVLRNP
Sbjct: 73 SAKAKPVNKDRFVSKMFLRGDSVILVLRNP 102
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 126 bits (305), Expect = 2e-28
Identities = 53/88 (60%), Positives = 73/88 (82%)
Frame = +1
Query: 118 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 297
S GPLS+LT+ VK NTQ+L+NCRNN+K+LGRVKAFDRHCN++L + +E+WTE ++
Sbjct: 18 SEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKG 77
Query: 298 XXXAVNKDKFISKMFLRGDSVILVLRNP 381
+NKD+FISK+F+RGDSVIL+L++P
Sbjct: 78 SAKYINKDRFISKLFVRGDSVILILKSP 105
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 116 bits (279), Expect = 3e-25
Identities = 54/87 (62%), Positives = 71/87 (81%)
Frame = +1
Query: 121 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXX 300
+GPLSVL V++N+QVLINCR+N+KLLGRVKAFDRH NM+L +V+EMWTEV +
Sbjct: 77 SGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEV--SGGGGK 134
Query: 301 XXAVNKDKFISKMFLRGDSVILVLRNP 381
+NKD++IS++FLRGDSV++VL NP
Sbjct: 135 KKYMNKDRYISRLFLRGDSVVVVLSNP 161
>UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotein
chain D2; n=1; Neurospora crassa|Rep: Probable small
nuclear ribonucleoprotein chain D2 - Neurospora crassa
Length = 126
Score = 110 bits (265), Expect = 2e-23
Identities = 53/96 (55%), Positives = 65/96 (67%)
Frame = +1
Query: 58 TKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCN 237
TKPR+ FS GPLS+L +V++++QVLI+ RN +K+L RVKAFDRH N
Sbjct: 13 TKPRNELTEYEVSLLEEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMN 72
Query: 238 MVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 345
MVLENVKEMWTE PR VNKD+FISKMF+
Sbjct: 73 MVLENVKEMWTETPRLANGKKGKPVNKDRFISKMFV 108
>UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 110
Score = 105 bits (252), Expect = 6e-22
Identities = 48/90 (53%), Positives = 66/90 (73%)
Frame = +1
Query: 115 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXX 294
F GP+S++ ++ T V+I+ RNN K++ RVKAFDRHCNMVLENVKE+WTE
Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------K 79
Query: 295 XXXXAVNKDKFISKMFLRGDSVILVLRNPL 384
+N+++FISK+FLRGDSVI+VL+ P+
Sbjct: 80 KGKNVINRERFISKLFLRGDSVIVVLKTPV 109
>UniRef50_Q2H8N5 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 103
Score = 101 bits (243), Expect = 8e-21
Identities = 51/97 (52%), Positives = 63/97 (64%)
Frame = +1
Query: 49 ATTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDR 228
A KPR+ S GPLS+L +V++++QVLI+ R+N+KLL RVKAFDR
Sbjct: 8 ALLQKPRNECTEYEIAQLENWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDR 67
Query: 229 HCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 339
HCNM+LENVKEMWTE P VNKD+FISKM
Sbjct: 68 HCNMILENVKEMWTETP-VHNGKKGRPVNKDRFISKM 103
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 86.2 bits (204), Expect = 4e-16
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Frame = +1
Query: 124 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP-----RTX 288
GP +LT ++ +NTQ + RNN+K LGRVKAFDRH NM+LEN+ EMW E+ ++
Sbjct: 57 GPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTEMWIEISKETKGKSP 116
Query: 289 XXXXXXAVNKDK----FISKMFLRGDSVILVLRN 378
N+ K +I KMFLRGDSVI LRN
Sbjct: 117 CYKQRKIQNQYKIIFYYIPKMFLRGDSVIYTLRN 150
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 78.2 bits (184), Expect = 1e-13
Identities = 33/82 (40%), Positives = 53/82 (64%)
Frame = +1
Query: 124 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 303
GP +L++ K N++++I+ +N K G ++ FD+HCN++LE+V E+W E
Sbjct: 16 GPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKK 75
Query: 304 XAVNKDKFISKMFLRGDSVILV 369
V K+KFI K+F RGD+VIL+
Sbjct: 76 KVVIKEKFIPKLFFRGDAVILI 97
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 67.3 bits (157), Expect = 2e-10
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +1
Query: 124 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 303
GPLS++ +++ VL++ R+N+K+LGRV A+DRH N+++E+ KE+ T +
Sbjct: 20 GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKR 79
Query: 304 XAVNKDKFISKMFLRGDSVILV 369
+ + K+F+RGD+VILV
Sbjct: 80 QGCEFSRKLGKVFIRGDTVILV 101
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 65.7 bits (153), Expect = 6e-10
Identities = 34/87 (39%), Positives = 53/87 (60%)
Frame = +1
Query: 121 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXX 300
TGP++ + ++V + +LI R+N+KL G +KA DRH NM+LE+V E+ P
Sbjct: 21 TGPMAPIVKAVYDKEPLLIALRSNRKLYGYIKAVDRHWNMILEHVIEI---TPTPAKPGQ 77
Query: 301 XXAVNKDKFISKMFLRGDSVILVLRNP 381
A + I+++FLRGD+VI + NP
Sbjct: 78 PAAAPIQRRINRLFLRGDNVICIYPNP 104
>UniRef50_Q94B79 Cluster: Small nuclear ribonucleoprotein-like
protein; n=1; Arabidopsis thaliana|Rep: Small nuclear
ribonucleoprotein-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 135
Score = 64.9 bits (151), Expect = 1e-09
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = +1
Query: 115 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVK 216
F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+
Sbjct: 19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVR 52
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +2
Query: 224 TGIATWFLKMLKKCGQKFQGREK-GRKVKLLTRISSFQKC 340
TG ATWFLKM +KCG +F+ EK RK+ LLT I S +C
Sbjct: 55 TGTATWFLKMSEKCGLRFRKPEKERRKLFLLTEIDSSARC 94
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 63.7 bits (148), Expect = 2e-09
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
P ++ V+N+ V+I RNNK+++G++ +D+H N++LENV E+
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSEL 58
Query: 307 AVNKDKFISKMFLRGDSVILVL 372
K KFI K+FLRGD+++L+L
Sbjct: 59 IKIKSKFIPKVFLRGDNIVLIL 80
>UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n=7;
Trypanosomatidae|Rep: Small nuclear ribonucleoprotein
SmD2 - Leishmania major
Length = 103
Score = 63.3 bits (147), Expect = 3e-09
Identities = 35/86 (40%), Positives = 52/86 (60%)
Frame = +1
Query: 124 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXX 303
GP S+L ++K +V I CRN+K LL V AFD+H N+VL+ V+E+ TE
Sbjct: 27 GPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE--------SH 77
Query: 304 XAVNKDKFISKMFLRGDSVILVLRNP 381
+ K + I +FLRG+SVI +++ P
Sbjct: 78 GSEQKQRTIENLFLRGESVIFIVKLP 103
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 50.0 bits (114), Expect = 3e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + +V + RN ++L GR+ AFD+H NMVL + +E T V
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ I +F+RGD VILV
Sbjct: 76 YKTAKRTIPMLFVRGDGVILV 96
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 50.0 bits (114), Expect = 3e-05
Identities = 20/68 (29%), Positives = 42/68 (61%)
Frame = +1
Query: 166 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 345
++ + C+ +++L+G++ A+D H NM+L NV+E + + + ++ + +F+
Sbjct: 4 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERN--LDMVFV 61
Query: 346 RGDSVILV 369
RGDS+ILV
Sbjct: 62 RGDSIILV 69
>UniRef50_Q29329 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=1; Sus scrofa|Rep: Small nuclear ribonucleoprotein Sm
D2 - Sus scrofa (Pig)
Length = 50
Score = 50.0 bits (114), Expect = 3e-05
Identities = 25/50 (50%), Positives = 28/50 (56%)
Frame = +1
Query: 46 MATTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNK 195
M+ KP+S F+TGPLSV TQS K TQVLINCRN K
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 49.2 bits (112), Expect = 6e-05
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1;
Babesia bovis|Rep: LSM domain containing protein -
Babesia bovis
Length = 89
Score = 48.4 bits (110), Expect = 1e-04
Identities = 24/84 (28%), Positives = 45/84 (53%)
Frame = +1
Query: 118 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 297
S P+ V+ V + +V + C+ ++++G++ A+D HCNM+L + E +T V
Sbjct: 2 SKEPMDVIR--VNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTN 59
Query: 298 XXXAVNKDKFISKMFLRGDSVILV 369
K +F+RGD++IL+
Sbjct: 60 QEVTTITSKDSGVVFVRGDALILL 83
>UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria
parva|Rep: Sm protein, putative - Theileria parva
Length = 84
Score = 46.8 bits (106), Expect = 3e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 169 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 276
+ + C+N ++L+GR++AFD HCNMVL V E T V
Sbjct: 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTV 57
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 46.4 bits (105), Expect = 4e-04
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 166 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNK-DKFISKMF 342
+V + C+ ++++ G++ A+D H NM+L N E + + + +V K ++ + +F
Sbjct: 21 EVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQ---SVVENDEESVKKIERNLDMVF 77
Query: 343 LRGDSVILV 369
+RGDS+ILV
Sbjct: 78 VRGDSIILV 86
>UniRef50_UPI00015B4C2B Cluster: PREDICTED: similar to
ENSANGP00000018479; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000018479 - Nasonia
vitripennis
Length = 225
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +1
Query: 124 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT 270
GPL VL Q ++N +V + RN + G V+A FDRH N+ LE+ E+WT
Sbjct: 114 GPLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDRHWNLALEDCLELWT 166
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Frame = +1
Query: 115 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVK----AFDRHCNMVLENVKE---MWTE 273
F+ GPLS+L +++++ +++ + R + G + AFD+H N++L +V+E +
Sbjct: 162 FTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKS 221
Query: 274 VPRTXXXXXXXAVNKDKFISKMFLRGDSVILVL 372
+P T ++ ++F++GD+V+ V+
Sbjct: 222 LPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +1
Query: 166 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 345
++ + RN+++L GR+ +D+H NM+L +V+E T + + + I FL
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQNIPVFFL 86
Query: 346 RGDSVILV 369
RGD + LV
Sbjct: 87 RGDGIFLV 94
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 44.0 bits (99), Expect = 0.002
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ +S+ + QVL+ N+K+ G + FD + NMVLENV+E E P
Sbjct: 23 PLEIIDKSIGHKIQVLMT--NDKEFKGTLIGFDDYVNMVLENVEEFDNEGP--------- 71
Query: 307 AVNKDKFISKMFLRGDSVILVL 372
K K I KM L G V +++
Sbjct: 72 ---KGKVIKKMLLNGSQVAMLI 90
>UniRef50_UPI00003C0461 Cluster: PREDICTED: similar to CG12924-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG12924-PA - Apis mellifera
Length = 118
Score = 43.6 bits (98), Expect = 0.003
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +1
Query: 124 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT 270
GPL +L + ++N T++ + RN + + G V+A FD+H N+ LE+ E+WT
Sbjct: 6 GPLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWT 58
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 43.2 bits (97), Expect = 0.004
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 169 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 348
V + R +++L GR+ A+D H NMVL + +E+ T K +F+R
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81
Query: 349 GDSVILV 369
GDSVIL+
Sbjct: 82 GDSVILI 88
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 42.7 bits (96), Expect = 0.005
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +1
Query: 169 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 348
VL+ R +++ G+++ +D HCNM+L + E +VP V K+ +F+R
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPE-----GQEPVTKN--TDMVFVR 77
Query: 349 GDSVILV 369
GDSVIL+
Sbjct: 78 GDSVILI 84
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 40.3 bits (90), Expect = 0.026
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +1
Query: 118 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 297
S P + + + VL+ R+ + + G +KA+DRH N+V E W E
Sbjct: 47 SDSPYAFFDEVLALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE-------- 98
Query: 298 XXXAVNKDKFISKMFLRGDSVILVLRN 378
+ + LRGD+VI+V+ N
Sbjct: 99 --NGIEYTEERKNFMLRGDNVIMVVSN 123
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 40.3 bits (90), Expect = 0.026
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +1
Query: 130 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXA 309
+S L + K+ VL+ RNNK + G +K FD H N+ LEN +++ E P
Sbjct: 8 ISTLMTNSKDKV-VLLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP-------- 58
Query: 310 VNKDKFISKMFLRGDSVILV 369
I K+ LRGD+++ +
Sbjct: 59 ------IGKVLLRGDNILAI 72
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 39.5 bits (88), Expect = 0.046
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 258
PL L +S+ NT V + ++ K + GR+KA+D H N+ LEN K
Sbjct: 7 PLDALGKSI--NTNVTVFLKDGKVVKGRLKAYDLHMNVALENAK 48
>UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 85
Score = 38.3 bits (85), Expect = 0.11
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL VL S+ Q+ I RNN +L G + ++D H NM++ +E
Sbjct: 7 PLDVLKFSIAQ--QIYIKMRNNIELKGTLVSYDNHLNMIISKAEE----------TSFQE 54
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ + + ++LRGD +IL+
Sbjct: 55 GIKTKRKLDALYLRGDGIILI 75
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 37.9 bits (84), Expect = 0.14
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = +1
Query: 169 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
V++ R +++L GR+ A+D HCN+VL +V+E
Sbjct: 22 VIVKLRGDRELKGRLHAYDSHCNLVLGDVEE 52
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 37.5 bits (83), Expect = 0.19
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +1
Query: 121 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXX 300
+ PL +L S+++ VL+ +NN + G + +FD H N++L N +E +
Sbjct: 51 SNPLYLLKTSLEDRVSVLL--QNNSSITGLLASFDEHMNLILINAEETGHSL-------- 100
Query: 301 XXAVNKDKFISKMFLRGDSVILVLR 375
++F + +RGDS+I V R
Sbjct: 101 ------NRFFPLLVIRGDSIIFVTR 119
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 37.1 bits (82), Expect = 0.25
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL +L ++ + +V I R + L+G ++AFD HCN+VL + E ++
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELS---- 57
Query: 307 AVNKDKFISKMFLRGDSVILV 369
++ +F+RGD+V L+
Sbjct: 58 --ESERRCEMVFIRGDTVTLI 76
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 36.7 bits (81), Expect = 0.33
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +1
Query: 160 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 339
N ++ + ++ ++L+G+ AFDRH N+VL + +E P + + + +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLV 73
Query: 340 FLRGDSVI 363
LRG+ VI
Sbjct: 74 LLRGEEVI 81
>UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein
NCU09512.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09512.1 - Neurospora crassa
Length = 168
Score = 36.3 bits (80), Expect = 0.43
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 169 VLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
V + R +++L GR+ A+D HCN+VL V+E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>UniRef50_Q7PT02 Cluster: ENSANGP00000018479; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000018479 - Anopheles gambiae
str. PEST
Length = 257
Score = 35.5 bits (78), Expect = 0.75
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 124 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKA----FDRHCNMVLENVKEMWT 270
GPL L + ++ +V ++ R K + G V FD+H N+ L +V E WT
Sbjct: 123 GPLGQLQRWMEGRNRVRVSIRKQKGVRGHVSGVLELFDKHWNLALSDVCETWT 175
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 35.5 bits (78), Expect = 0.75
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
P+ +L Q V N VLI+ + +++ G ++ +D H N+VL+ +E+
Sbjct: 10 PMDILDQ-VLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEI-------------- 54
Query: 307 AVNKDKFISKMFLRGDSVILVLRNP 381
+ + I + +RGD+VI + NP
Sbjct: 55 VQGQAQSIGTLIIRGDNVIYISPNP 79
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 35.1 bits (77), Expect = 1.00
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 166 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFL 345
+VLI R ++ + G + A+D H N+V+ +E V T + + +F+
Sbjct: 23 RVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERRTAEMLFV 82
Query: 346 RGDSVILV 369
RGD VIL+
Sbjct: 83 RGDGVILL 90
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 35.1 bits (77), Expect = 1.00
Identities = 24/84 (28%), Positives = 45/84 (53%)
Frame = +1
Query: 130 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXA 309
+ VL +S+ N VLI + NK + G + FD+H N++L++ + E+P A
Sbjct: 7 VKVLDESI--NQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSE----EIP---------A 51
Query: 310 VNKDKFISKMFLRGDSVILVLRNP 381
+ K + + +RGD+V+++ P
Sbjct: 52 EGEAKGLGSIVVRGDNVVMISPPP 75
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 34.7 bits (76), Expect = 1.3
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 264
PL L S+ N+ V+I + +++ G +K+FD H N+VL + +E+
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 34.3 bits (75), Expect = 1.7
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 264
PL V+ +SV +VL+ +K+ G++ FD + NMVLE+V E+
Sbjct: 54 PLEVIDRSVGKRVRVLMT--GDKEFNGKLIGFDDYVNMVLEDVTEV 97
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 34.3 bits (75), Expect = 1.7
Identities = 12/33 (36%), Positives = 26/33 (78%)
Frame = +1
Query: 166 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 264
QVL+ R++ ++ G +++FD+H N++LE+ +E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 33.9 bits (74), Expect = 2.3
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 118 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 297
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 298 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 396
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 33.5 bits (73), Expect = 3.0
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
PL+++ + + +++ I + +K+++G++ FD + NMVLE+V E
Sbjct: 12 PLALMDKCI--GSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 33.5 bits (73), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 163 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 267
+Q+ + K+ G++ FD + NMVLE V E+W
Sbjct: 27 SQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIW 61
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 33.1 bits (72), Expect = 4.0
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 264
P+ VL ++ N VLI+ + N++ G ++ +D + N+VL+N E+
Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEI 53
>UniRef50_Q4DRB4 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 920
Score = 32.7 bits (71), Expect = 5.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 339 HF*NELILVNSFTFLPFSRPWNFCPHFFNIFKNHVAMPV 223
HF +L+L +SF L + P+ CPH F++ K + +P+
Sbjct: 354 HFFKDLVL-SSFGVLVSTTPYRRCPHAFDVIKEALELPL 391
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 32.3 bits (70), Expect = 7.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 160 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
N ++ + ++++ ++G + AFDRH N+VL + +E
Sbjct: 6 NYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQE 39
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 32.3 bits (70), Expect = 7.0
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 166 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 279
+V++ R +K G +++FD+ N+VL++ E + VP
Sbjct: 27 KVVVTLRGGRKFFGILRSFDQFANLVLQDTYEKYFAVP 64
>UniRef50_O85133 Cluster: Flagellar biosynthetic protein fliP; n=31;
Bacteria|Rep: Flagellar biosynthetic protein fliP -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 301
Score = 32.3 bits (70), Expect = 7.0
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -2
Query: 395 AAVASGFLSTKITESPLRNIFEMNL---SLLTALPFFPFPVLGTSVHISLTFSRTML-QC 228
+A A+GF + +TE + ++L +L+TAL P VLG S + ++L Q
Sbjct: 73 SAAAAGFPAISVTEGTGGTSYLLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQA 132
Query: 227 RSNALTRPNSFLLFLQLIKT 168
T PN L+ L L T
Sbjct: 133 LGTQQTPPNQVLIALALFLT 152
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 31.9 bits (69), Expect = 9.3
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 121 TGPLSVLTQSVKN-NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
T LS + V+N + ++L+ R+ ++G +++FD+ N+VLE+ E
Sbjct: 4 TWHLSAVASLVENLDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVE 51
>UniRef50_Q6U1T1 Cluster: Long chain fatty acid synthetase; n=3;
Cryptosporidium|Rep: Long chain fatty acid synthetase -
Cryptosporidium parvum
Length = 766
Score = 31.9 bits (69), Expect = 9.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 273 FCPHFFNIFKNHVAMPVECFDTTQQFLVIPTVDQD 169
FCP F ++ N+V P+ C + +FL IP +D D
Sbjct: 510 FCPEFTDLSVNNVGGPIPCIEF--RFLSIPEMDYD 542
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 31.9 bits (69), Expect = 9.3
Identities = 14/43 (32%), Positives = 30/43 (69%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 255
PL+++ + + +++ I +N+K++ G ++ FD + NMVLE+V
Sbjct: 12 PLALIDKCL--GSKIWIIMKNDKEITGTLRGFDDYMNMVLEDV 52
>UniRef50_A5K4Q4 Cluster: LSM domain containing protein; n=4;
Plasmodium|Rep: LSM domain containing protein -
Plasmodium vivax
Length = 256
Score = 31.9 bits (69), Expect = 9.3
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL + T +T + I+ R+NK LG ++ +D+H N+ L + E R
Sbjct: 114 PLWLSTFEEDIDTYIFISSRDNKLYLGILRTYDQHGNIFLTHCVEKIIVPDRNCF----- 168
Query: 307 AVNKDKFISKMFLRGDSV 360
D ++ + +RGD++
Sbjct: 169 ---SDVYVGNLIIRGDNI 183
>UniRef50_Q59N02 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 806
Score = 31.9 bits (69), Expect = 9.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 310 VNKDKFISKMFLRGDSVILVLRNPLATAAGI*NQVKHFYFSVSGSLTLNLSKNVL 474
+NK I + L+GD + L+ + G Q+K + F++ L LNL +++
Sbjct: 399 INKKLIIQLINLKGDQLNLISNSSGGGGDGFEQQLKQYLFNILSLLNLNLQNSII 453
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,148,233
Number of Sequences: 1657284
Number of extensions: 8544088
Number of successful extensions: 17662
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 17309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17638
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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