Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M12
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...   146   2e-36
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    44   1e-05
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    29   0.42 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    28   0.98 
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.7  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   2.3  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   4.0  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.2  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   5.2  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   5.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   5.2  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   6.9  

>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score =  146 bits (353), Expect = 2e-36
 Identities = 72/109 (66%), Positives = 78/109 (71%)
 Frame = +1

Query: 61  KPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 240
           KPRS              FS GPLSVL Q+VKN+ QVLINCRNNKKLL RVKAFDRH NM
Sbjct: 7   KPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNM 66

Query: 241 VLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLA 387
           VLENVKEMWTE  RT       A+NKD+FISKMFLRGD V+LV+R P A
Sbjct: 67  VLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVVRIPSA 115


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +1

Query: 169 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 348
           V +  R +++L GR+ A+D H NMVL + +E+ T                 K    +F+R
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81

Query: 349 GDSVILV 369
           GDSVIL+
Sbjct: 82  GDSVILI 88


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +1

Query: 166 QVLINCRNNKKLLGRVKAFDRHCNMVLE 249
           +V++  R+ KKL+G +++FD+  N++L+
Sbjct: 23  KVIVVLRDGKKLIGILRSFDQFANLMLQ 50


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 7   GIHIVNLDIQ*KNMATTTKPRS 72
           GIH+ +LDI    M TTT PRS
Sbjct: 732 GIHVQSLDISELLMDTTTSPRS 753


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 401 IPAAVASGFLSTKITESPLRNIFEMNLSLLTALPFFPF 288
           IP   A GF +    E+PL   ++++   + A  F PF
Sbjct: 335 IPVETALGFFTDNTPENPLPTSYQVHSHSMKASEFVPF 372


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 133 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
           S+L  S   + ++       +++ G +K FD+  N+VL++V+E
Sbjct: 24  SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 312 NSFTFLPFSRPWNFCPHFFNIFKNHVAMPVECF 214
           N +T+  F+R WN   H+F +   HV +P+  F
Sbjct: 361 NCWTWDQFARTWNKPVHYFLL--RHVYVPLNSF 391


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 251 MLKKCGQKFQGREKGRKVKLLTRISSFQKCF 343
           M +  G+ F+G E+   +  LT I+ + +CF
Sbjct: 1   MFRSFGRLFRGSEESPTINDLTSITIYPQCF 31


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 239 WFLKMLKKCGQKFQGREKG-RKVKLLTRISS 328
           + +KMLKK   KF G+E+  ++V +L R+ +
Sbjct: 317 YVVKMLKKNAAKFTGKERHLQEVSILQRLQA 347


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 35  NKKTWLLLLNHVQK*LWRNCRRLRKKNL 118
           N   W+ + +H++K L + C  L KKN+
Sbjct: 33  NLGVWVEIYHHLEKGLLQQCFNLVKKNM 60


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -1

Query: 363 NHGVTSEKHF*NELILVN-SFTFLPFSRPWNFCPHFFNIFKNHVAMPVECFDTTQQF 196
           N  ++   HF N L L N     +  +RP N  PH  N   N +    E  DTT  F
Sbjct: 369 NINLSPVSHFSNGLDLQNLEEAPMNLTRPINANPHLTNHSPNDLTNGEEEMDTTSAF 425


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 312 NSFTFLPFSRPWNFC-PHFFNIFKNHVAMPVECFDTTQQFLVIPT 181
           N FTF   S+PW F    F +I     ++P   F  T Q   +P+
Sbjct: 248 NDFTFPYISQPWKFFESDFVHIVPVSPSIPEWTFQPTPQQNELPS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,328
Number of Sequences: 5004
Number of extensions: 38506
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)