Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M12
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 155 2e-38
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 119 1e-27
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 50 2e-06
07_01_0479 + 3606663-3607448 38 0.004
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 34 0.080
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 29 2.3
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 27 9.2
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 155 bits (376), Expect = 2e-38
Identities = 74/90 (82%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +1
Query: 115 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 291
FSTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVP+T
Sbjct: 16 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 75
Query: 292 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 381
VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 76 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 105
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 119 bits (287), Expect = 1e-27
Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Frame = +1
Query: 148 SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDK 324
S + +VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTEVP+T VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436
Query: 325 FISKMFLRGDSVILVLRNP 381
FISKMFLRGDSVI+VL+NP
Sbjct: 437 FISKMFLRGDSVIIVLKNP 455
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/89 (32%), Positives = 51/89 (57%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 19 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 76
Query: 307 AVNKDKFISKMFLRGDSVILVLRNPLATA 393
+ I +F+RGD VILV PL TA
Sbjct: 77 VRTTKRTIPFLFVRGDGVILV-SPPLRTA 104
>07_01_0479 + 3606663-3607448
Length = 261
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/68 (25%), Positives = 39/68 (57%)
Frame = +1
Query: 160 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 339
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSKTTGEREERRTLGLL 72
Query: 340 FLRGDSVI 363
LRG+ V+
Sbjct: 73 LLRGEEVV 80
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 33.9 bits (74), Expect = 0.080
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 118 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 297
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 298 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 396
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 163 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
+++ + + +K+L+G + FD + NMVLE+V E
Sbjct: 90 SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -2
Query: 395 AAVASGFLSTKITESPLRNIFEMNLSLLTALPFFPFPVLGTSVHISLTFSRTMLQCRSNA 216
A +ASG++ K E P R+ +++ LS L P L + I++ S L R
Sbjct: 438 AVIASGYVLVKGLEDPTRSRYKLFLSCSLILTSVIPPELPMELSIAVNTSLIALARRGIF 497
Query: 215 LTRP 204
T P
Sbjct: 498 CTEP 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,173
Number of Sequences: 37544
Number of extensions: 219907
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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