Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M12
(525 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 162 6e-40
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 162 6e-40
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 162 6e-40
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 162 6e-40
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 50 7e-06
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 50 7e-06
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 50 7e-06
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 50 7e-06
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 50 7e-06
BC014600-1|AAH14600.1| 55|Homo sapiens Unknown (protein for MG... 44 4e-04
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 29 7.6
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 29 7.6
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 29 7.6
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 162 bits (394), Expect = 6e-40
Identities = 80/114 (70%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Frame = +1
Query: 46 MATTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 225
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 226 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPL 384
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 162 bits (394), Expect = 6e-40
Identities = 80/114 (70%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Frame = +1
Query: 46 MATTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 225
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 226 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPL 384
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 162 bits (394), Expect = 6e-40
Identities = 80/114 (70%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Frame = +1
Query: 46 MATTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 225
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 226 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPL 384
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 162 bits (394), Expect = 6e-40
Identities = 80/114 (70%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Frame = +1
Query: 46 MATTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 225
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 226 RHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDKFISKMFLRGDSVILVLRNPL 384
RHCNMVLENVKEMWTEVP++ VNKD++ISKMFLRGDSVI+VLRNPL
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 49.6 bits (113), Expect = 7e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 49.6 bits (113), Expect = 7e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 49.6 bits (113), Expect = 7e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 49.6 bits (113), Expect = 7e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 49.6 bits (113), Expect = 7e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 306
PL ++ S+ + ++ + RN+++L GR+ A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 307 AVNKDKFISKMFLRGDSVILV 369
+ + I +F+RGD V+LV
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLV 95
>BC014600-1|AAH14600.1| 55|Homo sapiens Unknown (protein for
MGC:26736) protein.
Length = 55
Score = 43.6 bits (98), Expect = 4e-04
Identities = 26/46 (56%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 238 MVLENVKEMWTEVPR----TXXXXXXXAVNKDKFISKMFLRGDSVI 363
MVLENVKEM TEVP+ NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
PL ++ + + + +++ +++K+++G + FD NMVLE+V E
Sbjct: 14 PLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
PL ++ + + + +++ +++K+++G + FD NMVLE+V E
Sbjct: 14 PLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +1
Query: 127 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 261
PL ++ + + + +++ +++K+++G + FD NMVLE+V E
Sbjct: 14 PLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTE 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,710,408
Number of Sequences: 237096
Number of extensions: 1314450
Number of successful extensions: 1867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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