Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M12
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -2

Query: 398 PAAVASGFLSTKITESPLRNIFEM---NLSLLTALPFFPFPVLGTSVHISLTFSRTMLQC 228
           P  + + F    ++ +  RN++++   N+    +     +  +  +V  S+ +   +++C
Sbjct: 655 PQDIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNCVPINVQFSVLYGFVIIEC 714

Query: 227 RSNALTRPNSFLLFLQLIKTCVLF 156
           +     RP   LL   L  T + +
Sbjct: 715 QEPVTNRPTGQLLLDYLTDTVLAY 738


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 128 PFLYSLNLLKITHKS 172
           PF+Y+ N++K+T  S
Sbjct: 935 PFVYTFNVIKLTKTS 949


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,294
Number of Sequences: 438
Number of extensions: 2264
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)