Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M10
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 28 0.69
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 28 0.92
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 27 1.6
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 26 3.7
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 26 3.7
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 4.9
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 4.9
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 6.5
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 25 6.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 6.5
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 8.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 8.5
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 25 8.5
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 0.69
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 259 QKNISSLFSKLHGAFSDAVCQTKLATDKRTLDKTWKLMDKVVKLCQHHK 405
Q+N+S ++S L +F D V ++ L + D W++ + +C+ K
Sbjct: 108 QENLSYVYSPLFHSFQDWVVRSLLYHPQLEYDYVWRIEPGLKLVCEEKK 156
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 446 KISKMNGGLFFKFIL*C*HSFTTLSMSFQ 360
+ GG FF+F+ C HSF L SF+
Sbjct: 368 RFKSSTGGFFFEFLS-CYHSFLALQFSFE 395
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 3 GTRVFFFFFCQVVKRIGDVSVSDRCIVLIFVL*MLCWYVIMRKRMLKF 146
G RVF C V+ + ++ D VL+F+L +L + + M++F
Sbjct: 3 GLRVFEHVHCSVLYKFNNIVKFDLYNVLLFLLFLLPVLFVFARSMIEF 50
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 188 VIKRCFHLYVIRATIWRLPVTNHNRKIFLRYFPSCMAHFQMQYAK 322
VI CF LYV + N+KI R++ S + F+ Q+A+
Sbjct: 54 VILACFFLYVFSFITQK----KKNQKIASRWYGSLQSSFRQQFAQ 94
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 167 LLSFYNNEFEHAFSHYHVPAQHLQHKYQHY 78
LLSF N++EH HY +Q L + H+
Sbjct: 175 LLSF-RNDYEHRRKHYEKYSQCLNKQLDHF 203
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 305 QMQYAKLSLQQIRGHW 352
Q YAKLS+Q + G+W
Sbjct: 137 QNAYAKLSIQNVTGNW 152
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 295 HATWKITKKYFSVVICDGQPPYCSSND 215
H WK K + +IC PP C D
Sbjct: 490 HPLWKNRKDFRDKLICSIDPPGCQDID 516
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 80 YTTIAH*HIADAFDNLTK 27
YTTI H H+ DA + L K
Sbjct: 287 YTTIRHMHMRDAIEKLMK 304
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 235 PYCSSNDIQMKTTFYNTTLNFEHCYPFIIMNLSMRFLIITYQHNIYNTNINTI 77
P+ + D+ +K + LN E YP + + L I Y +N Y I +I
Sbjct: 890 PFTTLKDV-LKEVPQSVGLNVEFKYPMLSEAEEEKLLPIAYDYNFYVDTILSI 941
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 157 FIIMNLSMRFLIITYQHNIYNTNINTIQRSLTDTSPMR 44
FII L++ IIT H + + +T+QR TD P+R
Sbjct: 801 FIIRLLNINKRIIT-AHQV-DVEWSTLQRDFTDVDPVR 836
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 122 YHVPAQHLQHKYQH-YTTIAH*HIADAFDNLTKK 24
+H HL H+YQH + +A A++ DNL+++
Sbjct: 117 HHQQQLHLNHQYQHQHKNVA----ANSIDNLSRQ 146
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 148 MNLSMRFLIITYQHNIYNTNINTIQRSLTD 59
++ ++R+ + +++ N YN NTIQ +D
Sbjct: 240 LSSTLRYYLDSFKKNFYNVKPNTIQFMKSD 269
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 328 LATDKRTLDKTWKLMDKVVKLCQHHKMNLKN 420
L +K +++TWK M+K+++ + + L N
Sbjct: 138 LIYEKNPIEETWKAMEKLLETGKVRHIGLSN 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,318
Number of Sequences: 5004
Number of extensions: 43742
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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