Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M10
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0892 + 32763195-32764149,32764489-32764575,32764665-327648...    27   6.5  
10_01_0241 + 2529119-2529629,2531057-2531085,2531677-2531724           27   8.6  

>01_06_0892 +
           32763195-32764149,32764489-32764575,32764665-32764829,
           32764904-32766219
          Length = 840

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 241 ARHKSQQKN--ISSLFSKLHGAFSDAVCQTKLATDKRTLDKTWKLMDKVVKLCQHHKMNL 414
           A+H +QQ+    S + ++L  A  +AVC  K+ TD   L +  K +DK +     H ++ 
Sbjct: 143 AQHYTQQRPTMFSRMITELEPA--EAVCSPKICTDYSILHQVDKSLDKDICHQSDHSIHE 200

Query: 415 KNS 423
           + S
Sbjct: 201 RYS 203


>10_01_0241 + 2529119-2529629,2531057-2531085,2531677-2531724
          Length = 195

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 313 LHLKMRHATWKITKKYFSVVICDGQPPYCS 224
           LH    H+++ +T K  SVVIC G+  Y S
Sbjct: 158 LHWVYPHSSFYLTGKLISVVICMGRDGYKS 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,504
Number of Sequences: 37544
Number of extensions: 244614
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)