Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M10
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    69   2e-12
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    69   2e-12
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        69   3e-12
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    69   3e-12
Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical p...    32   0.27 
AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    27   5.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   5.8  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    27   5.8  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    27   5.8  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   5.8  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    27   7.7  

>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/54 (57%), Positives = 40/54 (74%)
 Frame = +1

Query: 334 TDKRTLDKTWKLMDKVVKLCQHHKMNLKNSPPFILDILPDTYQRLRVIYSKYED 495
           +D+R L K  K MD+VVK C   ++NLKNSPPFILDILPDTY  L +I+++  D
Sbjct: 47  SDRRFLLKACKFMDQVVKSCHSPRLNLKNSPPFILDILPDTYTHLMLIFTQNND 100


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/54 (57%), Positives = 40/54 (74%)
 Frame = +1

Query: 334 TDKRTLDKTWKLMDKVVKLCQHHKMNLKNSPPFILDILPDTYQRLRVIYSKYED 495
           +D+R L K  K MD+VVK C   ++NLKNSPPFILDILPDTY  L +I+++  D
Sbjct: 47  SDRRFLLKACKFMDQVVKSCHSPRLNLKNSPPFILDILPDTYTHLMLIFTQNND 100


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = +1

Query: 337 DKRTLDKTWKLMDKVVKLCQHHKMNLKNSPPFILDILPDTYQRLRVIYSKYED 495
           D+R L K  K MD+VVK C   ++NLKNSPPFILDILPDTY  L +I+++  D
Sbjct: 65  DRRFLLKACKFMDQVVKSCHSPRLNLKNSPPFILDILPDTYTHLMLIFTQNND 117


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = +1

Query: 337 DKRTLDKTWKLMDKVVKLCQHHKMNLKNSPPFILDILPDTYQRLRVIYSKYED 495
           D+R L K  K MD+VVK C   ++NLKNSPPFILDILPDTY  L +I+++  D
Sbjct: 65  DRRFLLKACKFMDQVVKSCHSPRLNLKNSPPFILDILPDTYTHLMLIFTQNND 117


>Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical
           protein Y41E3.19 protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/92 (21%), Positives = 42/92 (45%)
 Frame = +2

Query: 29  LSSCQTHRRCVSERSLYSVDICVVNVVLVRDNEKTHAQIHYYKRITVFKI*CCVIKRCFH 208
           +S   ++  C  + SL+S+ + VV+++ ++DN K    +   + I  + +    ++   +
Sbjct: 188 ISEMSSNSLCSEDCSLFSMTLSVVSIIPIQDNSKIRTMLVVVESIEEYGMCHTYVELNMN 247

Query: 209 LYVIRATIWRLPVTNHNRKIFLRYFPSCMAHF 304
             +      R  +    RKIF  Y P C  +F
Sbjct: 248 PSLKLMDAIR-KLLYRKRKIFEDYLPKCSLYF 278


>AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical
           protein Y47D3A.1 protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 65  ERSLYSVDICVVNVVLVRDNEKTHAQI 145
           +RS+Y++D+  +N+ L R  EK H  +
Sbjct: 300 QRSMYTLDVVEINIKLTRIMEKCHGSL 326


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 298 RHATWKITKKYFSVVICDGQPPYCSSNDIQMKTTFYNTTLNFEHCYPFIIMNLSMRFLII 119
           R+AT K+     S++ C G   YCS+        ++ +   F   Y   +M   +++ + 
Sbjct: 506 RYATQKVIATNISILFCSGLLLYCSTTSTLPPAVYFFSFFLFFTLYGATLMWFDLQYDMT 565

Query: 118 T 116
           T
Sbjct: 566 T 566


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -1

Query: 137 HAFSHYHVPAQHLQHKYQHYTTIAH*H 57
           H   H+H PA H  H   H+    H H
Sbjct: 457 HHGEHHHAPAHHGHHGEHHHAPAHHGH 483


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 298 RHATWKITKKYFSVVICDGQPPYCSSNDIQMKTTFYNTTLNFEHCYPFIIMNLSMRFLII 119
           R+AT K+     S++ C G   YCS+        ++ +   F   Y   +M   +++ + 
Sbjct: 506 RYATQKVIATNISILFCSGLLLYCSTTSTLPPAVYFFSFFLFFTLYGATLMWFDLQYDMT 565

Query: 118 T 116
           T
Sbjct: 566 T 566


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 301 MRHATWKITKKYFSVVICDGQPPYCSSNDIQMKTTFYNTTLNFEH 167
           M + T KI   +F+  ICD +  Y  +      + F+  T++FEH
Sbjct: 408 MWNLTEKIENLFFNRKICDFRKNYSKNTKNPHFSEFFFETIDFEH 452


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 352 DKTWKLMDKVVKLCQHHKMNLKNSP-PFILDILPDTYQ 462
           D +WKLM+    +CQH  ++  +     +L+ LP+ Y+
Sbjct: 617 DGSWKLMETSRFVCQHTPLHTSDKQFEMLLNSLPEEYR 654


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 226 SSNDIQMKTTFYNTTLNFEHCYPFIIMNLSMRFLIITYQHNIYNTNIN 83
           S   I+M+  F    LN + C P  I+ + + +L+I+    IYN   N
Sbjct: 227 SPQTIKMQKQFLRA-LNIQTCIPLAILLIPLCYLVISRVFLIYNQVAN 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,692,270
Number of Sequences: 27780
Number of extensions: 252861
Number of successful extensions: 709
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)