Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M10
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 38  CQTHRRCVSERSLYSVDICVVNVVLVRDNEKTHAQIHYYKRIT 166
           C+ H RC++  +L  +D+    V +  +  K    IH  + +T
Sbjct: 479 CRCHARCIARLALDMMDLAADEVQIDGEPVKITIGIHSGEVVT 521


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 38  CQTHRRCVSERSLYSVDICVVNVVLVRDNEKTHAQIHYYKRIT 166
           C+ H RC++  +L  +D+    V +  +  K    IH  + +T
Sbjct: 479 CRCHARCIARLALDMMDLAADEVQIDGEPVKITIGIHSGEVVT 521


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 260 RKIFLRYFPSCM 295
           RKIFL+Y P+ +
Sbjct: 335 RKIFLKYLPTIL 346


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 175 FEHCYPFIIMNLSMRFLIITYQHNIYNTNINTIQRSLT 62
           FE     +  NL+     +TY+H I   + N I+ +L+
Sbjct: 49  FEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIKTALS 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,850
Number of Sequences: 438
Number of extensions: 3062
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)