Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M09
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 47 2e-06
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 46 5e-06
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 43 3e-05
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 42 4e-05
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 40 2e-04
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 39 4e-04
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 37 0.002
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 35 0.007
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 34 0.015
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 32 0.062
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 31 0.082
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 30 0.25
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 29 0.33
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.33
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 29 0.33
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.58
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 28 0.77
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 1.3
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 1.8
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 2.3
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 4.1
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 26 4.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 5.4
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 7.2
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 25 7.2
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 25 7.2
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 7.2
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 7.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 9.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 9.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 9.5
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 46.8 bits (106), Expect = 2e-06
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Frame = +2
Query: 158 SCIKRLSFKTSCNKLVLFSSQPDQAYEKKLGKIVNVAIIGAPNSGKSTLINNITKRKA-- 331
S +K S S L S + +KKL + V +IG PN GKS++IN + R A
Sbjct: 237 SNLKHQSASASSTISNLLKSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVINALVNRSANG 296
Query: 332 ----CAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVTNRDEKKYNLPQSMVEACYKSL 499
C A N T L R + N+ +++ D+PGIV + K +L + ++ S
Sbjct: 297 RSAPCPAGNVAGMTTSL-REVKLDNKLRLV--DSPGIVFPSSDSKDDLYRLVMLNAVSST 353
Query: 500 RCADVVGV 523
+ D V V
Sbjct: 354 KVDDPVAV 361
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 45.6 bits (103), Expect = 5e-06
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIV 433
VA IG P+ GKSTL++ ITK K+ AS + TT+ I + ++ +I LD PGI+
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYE-FTTLTAIPGVLEYDGAEIQMLDLPGII 120
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 42.7 bits (96), Expect = 3e-05
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +2
Query: 245 LGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTP 424
L K +NVAI+G N+GKS+LIN + R+ S + TT I + N ++ DT
Sbjct: 236 LRKGINVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTA 295
Query: 425 GIVTNRD 445
G+ D
Sbjct: 296 GLRKGED 302
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 42.3 bits (95), Expect = 4e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Frame = +2
Query: 257 VNVAIIGAPNSGKSTLINNIT-----KRKACAASNKVHTTIKLIRAMCYHNETQIIXLDT 421
V V +G PN+GKS+++N++ K K+ N T ++ + N+ + LDT
Sbjct: 146 VYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDT 205
Query: 422 PGIVTNRDEKKYNLPQSMVEACYKSLRCADVVGVVHDIS 538
PGI+T K ++ + + C K G+VH ++
Sbjct: 206 PGIMTPSITKPEDMLKLSLVGCVKE-------GIVHPVT 237
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 39.9 bits (89), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 254 IVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIV 433
I V IG P+ GKSTL+ +T ++ AA+ + TT+ + + +N +I LD PGI+
Sbjct: 63 IGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEF-TTLTTVPGVLQYNGAKIQILDLPGII 121
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 39.1 bits (87), Expect = 4e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 251 KIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGI 430
K ++V +IG PN+GKS++IN + K+K C + + K+ + + +I +D PGI
Sbjct: 309 KQISVGLIGFPNAGKSSIINTLRKKKVCNVA-PIPGETKVWQYVALMK--RIFLIDCPGI 365
Query: 431 V 433
V
Sbjct: 366 V 366
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 236 EKKLGKIVNVAIIGAPNSGKSTLINNITKRKACAAS---NKVHTTIKLIRAMC--YHNET 400
E +L I + ++G PN+GKSTL+N +T K+ ++ I I+ H+
Sbjct: 230 ELELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSF 289
Query: 401 QIIXLDTPGIVTNRDEKK 454
Q D PGI+ + K
Sbjct: 290 QYRLADIPGIIKGASDGK 307
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 35.1 bits (77), Expect = 0.007
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 245 LGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCY 388
+G+ + + +G P+SGKST++N +T A N TTI+ RA+ Y
Sbjct: 1 MGRDILIGFVGKPSSGKSTMLNALTDATA-KTGNFPFTTIEPNRAIGY 47
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 33.9 bits (74), Expect = 0.015
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 194 NKLVLFSSQPDQAYEK--KLGKIVNVAIIGAPNSGKSTLINNITKRKACAASNK 349
N V F+S P+Q + + + G NV ++G SGKSTL+N + R + K
Sbjct: 73 NGYVGFASLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQK 126
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 31.9 bits (69), Expect = 0.062
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 248 GKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRA 379
G + + I+G PN GKSTL +TK +N TI + A
Sbjct: 43 GNHLKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHA 86
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 31.5 bits (68), Expect = 0.082
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNI--TKRKACAASNKVHTT--IKLIRAMCYHNETQIIXLDTPG 427
VA++G+ ++GKSTL+NN+ T AS + TT I L +A N + I+ +D G
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTTKGIWLSKA----NNSPILVMDVEG 96
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.9 bits (64), Expect = 0.25
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 257 VNVAIIGAPNSGKSTLINNITKR 325
V VA++G P +GKSTLI ++ +R
Sbjct: 75 VIVAVMGPPGTGKSTLIKSLVRR 97
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 248 GKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTI 364
G + I+G PN GKST ITK +N + TI
Sbjct: 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI 56
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 29.5 bits (63), Expect = 0.33
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Frame = +2
Query: 203 VLFSSQPDQAYEKKLGKIV-------NVAIIGAPNSGKSTLINNITKR 325
+L++S +K LG+I +V ++G NSGKSTL+ + KR
Sbjct: 185 MLYTSHSFNLVDKLLGRINPLLCSRGHVYVVGEANSGKSTLLKTLAKR 232
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 29.5 bits (63), Expect = 0.33
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 194 NKLVLFSSQPDQAYEKKL--GKIVNVAIIGAPNSGKSTLINNI 316
N V F S Q K + G NV ++G SGKSTLIN +
Sbjct: 10 NNYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTL 52
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = -1
Query: 504 HLKLL*QASTIDCGK--LYFFSSLLVTIPG 421
HLK++ ++T++ K LYF S L+TIPG
Sbjct: 783 HLKIIIMSATLNAEKFQLYFEGSNLITIPG 812
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 28.3 bits (60), Expect = 0.77
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 239 KKLGKIVNVAIIGAPNSGKSTLINNI-TKRKACAASNKVHTTIKLIR 376
KK KI V ++GA +SGKST+ I K + ++ T I +IR
Sbjct: 29 KKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIPVIR 75
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 245 LGKIVNVAIIGAPNSGKSTLINNITKRKACAASNK 349
LG+ +V I+G SGKS L+++I R A + K
Sbjct: 572 LGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINEK 606
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNIT 319
VAI+G +GKSTL+N IT
Sbjct: 419 VAIVGKNGTGKSTLLNLIT 437
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 2.3
Identities = 23/108 (21%), Positives = 45/108 (41%)
Frame = +2
Query: 179 FKTSCNKLVLFSSQPDQAYEKKLGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHT 358
F C+ + + P+ + + G+I+N I G GK T + K AS K
Sbjct: 265 FYIHCDDFDIIGASPELLVKSEHGRIINHPIAGTVPRGK-TKEEDEAYAKDLLASVKDRA 323
Query: 359 TIKLIRAMCYHNETQIIXLDTPGIVTNRDEKKYNLPQSMVEACYKSLR 502
++ + ++ +++ LDT + +K++ Q +V LR
Sbjct: 324 EHVMLVDLARNDVSRVCDLDTTSVDKLMTIEKFSHVQHLVSQVSGVLR 371
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 4.1
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +2
Query: 182 KTSCNKLVLFSSQPDQAYEKKLGKIVNVAIIGAPNSGKS-TLINNITKRKACAASNKVHT 358
K S N L + P A + K +N+ I + ++ +S + +++I + + + +N++ +
Sbjct: 476 KPSSNPNNLLLNDPSPA-STPVAKTINLNEIESVHNAESVSTLSSIPRTEQTSVANRIPS 534
Query: 359 TIKLIRAMCYHNETQIIXLDTPGIVTNRDEKKYNLPQSMVEA-CYKS---LRCADVVGVV 526
++ + + + L N+ KK N+ S V+ +S L+ ++ +GVV
Sbjct: 535 KTAALQKLKFFQSRPLDGL-------NKFSKKINISLSGVQKDIVRSDALLKFSNKIGVV 587
Query: 527 HDIS 538
HDIS
Sbjct: 588 HDIS 591
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 194 NKLVLFSSQPD--QAYEKKLGKIVNVAIIGAPNSGKS 298
NK L S D A E++LG+I+ I G ++G+S
Sbjct: 76 NKFTLQPSDEDIHTANERRLGEIIGTGIAGKLHTGRS 112
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITK 322
VAI+G SGKSTL+ + K
Sbjct: 1131 VAIVGISGSGKSTLVELLRK 1150
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 346 VRCSTSFPLGNVVNQCTFPRIRSSYYSDIHNFSQF 242
+ C T P ++ N+ T IR++ SD H + +F
Sbjct: 150 IDCETLDPWPSMQNKATSVTIRNTPASDFHVYKEF 184
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 201 NLLQEVLNESLLIQDRKENMISLK 130
N+ +++LN+ LL Q R +++ISL+
Sbjct: 2 NMEEQILNDYLLSQGRLQSIISLE 25
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 140 IMFSFLS-CIKRLSFKTSCNKLVL 208
IM+S + C KRLS K SC L++
Sbjct: 327 IMYSTMEPCSKRLSKKVSCTDLIV 350
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 194 NKLVLFSSQPDQAYEKKLGKIVNVAIIGAPNSGKSTL 304
N LV SS ++K + + V ++G P+SGKSTL
Sbjct: 237 NYLVRNSSSHPYHFKKSEHQEI-VVLVGFPSSGKSTL 272
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 362 IKLIRAMCYHNETQIIXLDTPGIVTNRD 445
+K++ A C N Q++ LD P +RD
Sbjct: 917 VKVVIAACLWNNPQLLVLDEPTNFLDRD 944
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 248 GKIVNVAIIGAPNSGKSTLINNITK 322
GKI A++GA SGKST+I + +
Sbjct: 448 GKIT--ALVGASGSGKSTIIGLVER 470
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 257 VNVAIIGAPNSGKSTLINNI 316
VN+ IG ++GKSTL NI
Sbjct: 239 VNIVFIGHVDAGKSTLGGNI 258
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.5
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 320 KRKACA--ASNKVH-TTIKLIRAMCYHNETQIIXLDTPGIVTNRDEKKYNLPQSMVEACY 490
KR A A A N ++ TT K I A ++ T ++ G +TNR+ +K + P+S+V
Sbjct: 446 KRAAAARVAQNALNKTTYKAISA--FNFATDMVN-KVAGEITNREVEKSSSPKSVVLHLL 502
Query: 491 KSLR 502
K+ R
Sbjct: 503 KTTR 506
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = -3
Query: 205 NQFVTRSLERKPFDTRQKGKHDFLK------ISTLLS*SQSTCNLFSFFNNVSFYLHNIN 44
NQF ++ DT+Q HDF + ++TL Q N FS+ + FY +N N
Sbjct: 730 NQFQVSNINSTDRDTKQPKMHDFRQPLHPNPMTTLKRKGQH--NSFSYDKSTLFYDNNNN 787
Query: 43 RDK 35
++
Sbjct: 788 LEE 790
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,541
Number of Sequences: 5004
Number of extensions: 44699
Number of successful extensions: 185
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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