Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M09
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 60 1e-09
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 59 2e-09
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 48 5e-06
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 45 3e-05
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 44 1e-04
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 44 1e-04
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 42 2e-04
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 42 4e-04
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 40 0.001
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 38 0.004
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 38 0.005
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 37 0.009
11_06_0250 + 21701741-21701826,21702094-21702246,21703060-217031... 37 0.012
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 35 0.048
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 34 0.063
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 33 0.11
03_02_0267 + 6990674-6990890,6991692-6991761,6991824-6991913,699... 32 0.34
01_06_0603 + 30530486-30530984,30531174-30531202,30531484-305316... 31 0.44
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 31 0.59
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 30 1.0
09_04_0528 - 18348071-18348136,18348477-18351209 29 2.4
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 29 2.4
12_01_0610 + 5030130-5030247,5030957-5033193 29 3.1
09_04_0527 - 18337968-18338077,18338440-18341212 29 3.1
04_04_0193 + 23482177-23484963 29 3.1
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 29 3.1
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 28 5.5
06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124 28 5.5
04_01_0106 + 1102880-1105691,1105781-1105806 28 5.5
03_02_0582 + 9624481-9626844 27 7.2
11_06_0754 - 26935647-26937780,26940890-26941827 27 9.6
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 27 9.6
01_06_1264 + 35854600-35856849 27 9.6
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVTNR 442
VA++G PN GKSTLIN I +K ++K TT I +C E QII DTPG++
Sbjct: 128 VAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTPGVIKKE 187
Query: 443 DEKKYNLPQSMVEACYKSLRCADVV 517
K + V + S C VV
Sbjct: 188 MHKLDTMMMKNVRSAVGSADCVLVV 212
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/94 (32%), Positives = 50/94 (53%)
Frame = +2
Query: 257 VNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVT 436
++V I+GAPN+GKS+L N + K A S K +TT I + TQI DTPG++
Sbjct: 149 LSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFDTPGLML 208
Query: 437 NRDEKKYNLPQSMVEACYKSLRCADVVGVVHDIS 538
+ VE+ + S+ D++ V+ D++
Sbjct: 209 GHHGLPHRDVTVRVESAWSSINLYDLLIVLFDVN 242
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVTNR 442
VA+IG P+ GKSTL+ +T + AAS + TT+ I + +N+T+I LD PGI+
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEF-TTLTCIPGIIQYNDTKIQLLDLPGIIEGA 123
Query: 443 DEKK 454
E K
Sbjct: 124 SEGK 127
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 45.2 bits (102), Expect = 3e-05
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Frame = +2
Query: 176 SFKTSCNKLVLFSSQ----PDQAYEKKLGKIVNVAIIGAPNSGKSTLINNITKRKACAAS 343
+FK+ NK + + P+ + +L + +V I+GAPN+GKSTL+ I+ K A+
Sbjct: 422 AFKSGTNKAPRIAEKGEKGPEMWIDLELKLVADVGIVGAPNAGKSTLLTAISAAKPTIAN 481
Query: 344 NKVHTTIKLIRAMCYHNETQIIXLDTPGIVTNRDEKKYNLPQSMVEACYKSLRCADVVGV 523
T + + + + ++ D PG++ + Y L + S RC+ +V V
Sbjct: 482 YPFTTLLPNLGVVSLDFDATMVVADLPGLLEGA-HRGYGLGHEFLR---HSERCSVLVHV 537
Query: 524 V 526
V
Sbjct: 538 V 538
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +2
Query: 245 LGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTP 424
L + V I+G PN GKS+LIN + KR+ C A+ + T +L + + + ++ ++ LD+P
Sbjct: 397 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTREL-KWVRFGSDLEL--LDSP 453
Query: 425 GIVTNR 442
GI+ R
Sbjct: 454 GILPMR 459
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +2
Query: 212 SSQPDQAYEKKLGKI-VNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCY 388
S +A+E K+ + +AI+G PN GKSTL+N + + + + T IR
Sbjct: 296 SEAETEAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQ 355
Query: 389 HNETQIIXLDTPGIVTNRDEKKYNLPQSMVEACYKSLRCADVVGVVHD 532
+ + +DT G + ++K S+V++ K+L A +V +V D
Sbjct: 356 FDNRTVYLVDTAGWMERSGKEKGPASLSVVQS-RKNLMRAHIVALVLD 402
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +2
Query: 233 YEKKLGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIX 412
Y+K L + VAIIG PN GKS+L+N +K + + TT ++ A + I
Sbjct: 298 YDKLLQSGLQVAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITL 357
Query: 413 LDTPGI 430
LDT GI
Sbjct: 358 LDTAGI 363
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 41.5 bits (93), Expect = 4e-04
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +2
Query: 254 IVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIV 433
I + ++G+PN GKS+L+ ++ K S TT ++ N + DTPG++
Sbjct: 244 IPTLCLVGSPNVGKSSLVRILSSGKPEVCSYP-FTTRGILMGHIVSNHERFQVTDTPGLL 302
Query: 434 TNRDEKKYNLPQSMVEACYKSLRCADVVGVVHDIS 538
T D+++ N+ + + A L A V VHD+S
Sbjct: 303 TRDDDERNNI-EKLTLAVLSHLPIA--VLYVHDLS 334
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +2
Query: 242 KLGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDT 421
+L I +V ++G PN+GKSTL++ +++ + A T I ++ Y + + D
Sbjct: 335 ELKSIADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTYEDYFSVKVADI 394
Query: 422 PGIVTNRDEKK 454
PG++ E +
Sbjct: 395 PGLIKGAHENR 405
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 38.3 bits (85), Expect = 0.004
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = +2
Query: 152 FLSCIKRLSFKTSCNKLVLFSSQPDQAY---EKKLGKIVNVAIIGAPNSGKSTLINNI-- 316
FL+ + R+ T L + Q Y +K L N+ ++G GKST+IN+I
Sbjct: 4876 FLNLLSRMGANTMDFNLDHHHHKSSQQYHDNQKDLSFSCNILVLGKIGVGKSTVINSIMG 4935
Query: 317 TKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVTNRDEKKYN 460
++ A + T ++L+ ++ + II DTPG+ TN ++ +N
Sbjct: 4936 EEKNKINAFDGATTNVRLVSSVVDGIKVNII--DTPGLRTNVMDQGWN 4981
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVTNR 442
V ++G P+ GKSTL+N +T + A+ + TT+ I + + +I LD PGI+
Sbjct: 78 VGLVGFPSVGKSTLLNKLTGTFSEVAAYE-FTTLTCIPGVIMYKGAKIQLLDLPGIIEGA 136
Query: 443 DEKK 454
+ K
Sbjct: 137 KDGK 140
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVT 436
VAIIG PN GKS L N + ++ T + Y + + + +DT G++T
Sbjct: 163 VAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDREFMVIDTGGVIT 220
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXL-DTPGIVTN 439
+AI+G PN GKS+++N + S TT I + Q L DT GI
Sbjct: 376 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 435
Query: 440 RDEKKYNLPQS--MVEACYKSLRCADVVGVV 526
V+ ++++R +DVV +V
Sbjct: 436 AAVASAGSTTETLSVKRAFRAIRRSDVVALV 466
>11_06_0250 +
21701741-21701826,21702094-21702246,21703060-21703176,
21703288-21703402,21703604-21703624,21703710-21703757,
21704156-21704293,21704789-21704884,21704971-21705084,
21705364-21705432,21705613-21705683,21705785-21705878,
21706202-21706327,21706425-21706514,21706651-21706749
Length = 478
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIV 433
V+++G N+GKSTL+N +T A T R + N T+ + DT G +
Sbjct: 256 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLMKNGTEFLLTDTVGFI 312
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 34.7 bits (76), Expect = 0.048
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 227 QAYEKKLGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMC-YHNETQ 403
+++E KL + V I+G PN GKS+LIN++ + + V +T + R+M + +
Sbjct: 261 RSHELKLA--ITVGIVGLPNVGKSSLINSLKRSRVV----NVGSTPGVTRSMQEVQLDKK 314
Query: 404 IIXLDTPGIV 433
+ LD PG+V
Sbjct: 315 VKLLDCPGVV 324
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 34.3 bits (75), Expect = 0.063
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 230 AYEKKL-GKIVNVAIIGAPNSGKSTLINNITKRK 328
+Y K+L G NV +IGA N+GKSTLIN K++
Sbjct: 398 SYVKELAGPRSNVWVIGAQNAGKSTLINAFAKKQ 431
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 203 VLFSSQPDQ--AYEKKLGKIVNVAIIGAPNSGKSTLINNIT 319
VL QP + + E L + +V ++G PN+GKSTL++ IT
Sbjct: 257 VLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAIT 297
>03_02_0267 +
6990674-6990890,6991692-6991761,6991824-6991913,
6992635-6992797,6992910-6993137
Length = 255
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 266 AIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPGIVTN 439
A++G N GKS+LIN + +RK A ++K + I + ++ L G+ N
Sbjct: 43 AVLGRSNVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPGYGMYHN 100
>01_06_0603 +
30530486-30530984,30531174-30531202,30531484-30531660,
30533662-30533745,30534059-30534277
Length = 335
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 266 AIIGAPNSGKSTLINNITKRKACAASNK 349
A++G N GKS+L+N++ +RK A ++K
Sbjct: 137 ALVGRSNVGKSSLLNSLVRRKRLALTSK 164
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 31.1 bits (67), Expect = 0.59
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNI----TKRKACAASNKVHTTIKL------IRAMCYHNETQIIX 412
V ++G PN GKS LIN+I T R NK T L I ++ I
Sbjct: 139 VMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISSQPSIYV 198
Query: 413 LDTPGIV 433
LDTPG++
Sbjct: 199 LDTPGVL 205
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 242 KLGKIVNVAIIGAPNSGKSTLINNITKRKACAASNK 349
++ + I+G PN GKSTL N I + A+S +
Sbjct: 56 RISMSLRAGIVGLPNVGKSTLFNAIVRNLPSASSEE 91
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLIRAMCYHN 394
+A+ G GKSTL+N+I K +A ++ H + + ++ H+
Sbjct: 208 IAVWGMGGLGKSTLVNDIYKNEAIVSNFNCHAWLCISQSSKMHD 251
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 149 SFLSCIKRLSFKTSCN--KLVLFSSQPDQAYEKKLGKI 256
S L RLS K +C+ K V+ ++P QAYEK L I
Sbjct: 534 SKLEVSMRLSNKVTCHCGKCVVVVAEPSQAYEKDLSTI 571
>12_01_0610 + 5030130-5030247,5030957-5033193
Length = 784
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/89 (20%), Positives = 39/89 (43%)
Frame = +2
Query: 194 NKLVLFSSQPDQAYEKKLGKIVNVAIIGAPNSGKSTLINNITKRKACAASNKVHTTIKLI 373
NK + +++ + L + + ++G GKS IN+I A + T ++
Sbjct: 139 NKARVIAAEQEAPGGPDLDLPLRILLLGKTGVGKSATINSIFDEPKVATNALAPATERIR 198
Query: 374 RAMCYHNETQIIXLDTPGIVTNRDEKKYN 460
R ++ +DTPG++ + ++ N
Sbjct: 199 RIDGTIKGIRVTVIDTPGLLPHYHRQRKN 227
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKACAAS 343
+A+ G GKSTL+NN+ K++A ++
Sbjct: 209 IAVWGMGGLGKSTLVNNVYKKEATVSN 235
>04_04_0193 + 23482177-23484963
Length = 928
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLIN--NITKRKACAASNKVHTTI 364
+ I GAP GK+TL++ N T A AAS +H I
Sbjct: 161 IGIYGAPGVGKTTLLHHFNNTFLSASAASMDIHLVI 196
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +2
Query: 251 KIVNVAIIGAPNSGKSTLINNITK 322
++V VA++G N+GKSTL++ +++
Sbjct: 286 ELVTVAVVGYTNAGKSTLVSALSE 309
>12_02_1032 +
25542420-25542573,25543511-25543577,25543816-25543918,
25544435-25544505,25544639-25544702,25545260-25545316,
25545435-25545593,25545967-25546035,25546111-25546202,
25546579-25546657,25546923-25547088,25547480-25547604,
25547737-25548078,25548271-25548432,25548520-25548624,
25548766-25548860,25548948-25549044,25549848-25550165,
25550228-25550296
Length = 797
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNI---TKRKACAASNKVHTTIKLIRAMCYHNETQIIXLDTPG 427
V+I+G +SGKSTL+N + R+ A + TT + A C E + +D G
Sbjct: 43 VSIMGPQSSGKSTLLNQLFGTNFREMDAFRGRSQTTKGIWIARCVGVEPCTVVMDLEG 100
>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
Length = 904
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 122 STYFKEIMFSFLSCIKRLSFKTSCNKLV-LFSSQPDQAYEKKLGKIVNVAIIGAPNSGKS 298
ST+ I+ S K + + N ++ + S + D LGK++ V+I+G+ GK+
Sbjct: 154 STHDPRILLSNTDAAKLVGIDGTRNDIIKILSLEGDNL---PLGKMIKVSIVGSGGMGKT 210
Query: 299 TL 304
TL
Sbjct: 211 TL 212
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 194 NKLVLFSSQPDQAYEKKLGKIVNVAII---GAPNSGKSTLINNITKRKA 331
NK+V F+++ D E + + +II G SGK+TL+ + +RKA
Sbjct: 172 NKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKA 220
>03_02_0582 + 9624481-9626844
Length = 787
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 263 VAIIGAPNSGKSTLINNITKRKA 331
+A++GA SGKSTLI+ + R A
Sbjct: 171 MAVLGASGSGKSTLIDALANRIA 193
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 161 CIKRLSFKTSCNKLVLFSSQPDQAYEKKLGKIVNVAIIGAPNSGKSTLINNITKR 325
C+ + + NKL + + D +K+L V+I+G GK+TL N + ++
Sbjct: 206 CVPHVGINVAMNKLEDWLTACDDEDQKRLRV---VSIVGVGGIGKTTLANELYRK 257
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 260 NVAIIGAPNSGKSTLINNITK 322
NV +GA N GKSTL+N I +
Sbjct: 235 NVWAVGARNVGKSTLLNAIAR 255
>01_06_1264 + 35854600-35856849
Length = 749
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 236 EKKLGKIVNVAIIGAPNSGKSTLINNITKR 325
E + G+I+ A++GA SGKSTLI+ + R
Sbjct: 137 EAREGEIL--AVMGASGSGKSTLIDALANR 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,066
Number of Sequences: 37544
Number of extensions: 232700
Number of successful extensions: 745
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -