Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M09
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 257 VNVAIIGAPNSGKSTLINNI 316
           +N+ +IG  +SGKST   ++
Sbjct: 8   INIVVIGHVDSGKSTTTGHL 27


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 257 VNVAIIGAPNSGKSTLINNITKRKACAASNKV--HTTIKL 370
           +N+  IG    GKST++  I+  +     N++  + TIKL
Sbjct: 43  INIGTIGHVAHGKSTIVKAISGVQTVRFKNELERNITIKL 82


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 257 VNVAIIGAPNSGKSTLINNI 316
           +N+ +IG  +SGKST   ++
Sbjct: 8   INIVVIGHVDSGKSTTTGHL 27


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 204 TNLLQEVLNESLLIQDRKENMI 139
           TN+ +EVL E+ +IQ+    ++
Sbjct: 433 TNISEEVLKEAKIIQEEIRTLL 454


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 204 TNLLQEVLNESLLIQDRKENMI 139
           TN+ +EVL E+ +IQ+    ++
Sbjct: 139 TNISEEVLKEAKIIQEEIRTLL 160


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 497  NSCNKLQPLTVVNYISFHLCW 435
            N+C++++  TV+  I  H  W
Sbjct: 1662 NTCDRIKRGTVIRSIRSHSTW 1682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,388
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)