Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M07
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 195 4e-51
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.10
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.17
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 2.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.8
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.8
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 3.8
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 8.7
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 195 bits (476), Expect = 4e-51
Identities = 95/176 (53%), Positives = 128/176 (72%), Gaps = 2/176 (1%)
Frame = -1
Query: 615 PDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHNSK-SIIIYVPMPKLKAFQK 442
P + ++Q L +LE++S D+ +LR L IT A+E+E+ K +I+++VP P LKAF K
Sbjct: 15 PTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHK 74
Query: 441 IQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLV 262
Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+V
Sbjct: 75 CQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIV 132
Query: 261 FPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 94
FP EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 133 FPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.10
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -1
Query: 306 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 130
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 129 KLTGREVTFEFP 94
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.17
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -1
Query: 393 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 214
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 213 SQLIKVHLD-KNQQTTIEHKV 154
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -1
Query: 612 DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 502
+T+E I + L++L + S++ Q+ ++I E+E+
Sbjct: 78 ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 2.8
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 8/172 (4%)
Frame = -1
Query: 582 LVELETN--SDLKAQLRELYIT-KAKEIELHNSKSII--IYVPMPKLKAFQKIQIRLVRE 418
L+E+E+ S L ++ L + K E E++N + I + +L+ + + I +
Sbjct: 875 LIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEFDRLEREKSVAITAINH 934
Query: 417 LEKK---FSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEI 247
LEK+ G+ F I S R +Q S+ AI ++ +
Sbjct: 935 LEKENDWIDGQKQHFGKQGTIFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG 994
Query: 246 VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 91
V K+ KL S + +H DK + +D F+ + T REV F E
Sbjct: 995 VEKK-EAKLR-SMIKTIHRDKKKIQDTVKSIDRFKRSALEKTWREVNSSFGE 1044
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -1
Query: 480 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 388
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 196 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 330
H D + ++ +DA F+N+ + + + G+IYRS CP F F+
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 360 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 235
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,144
Number of Sequences: 5004
Number of extensions: 51661
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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