Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M07
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 229 1e-60
AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical ... 29 2.6
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 29 3.5
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 4.6
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 4.6
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 4.6
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 6.1
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 6.1
Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical pr... 27 8.1
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 8.1
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 8.1
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 8.1
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 8.1
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 229 bits (560), Expect = 1e-60
Identities = 105/173 (60%), Positives = 139/173 (80%), Gaps = 1/173 (0%)
Frame = -1
Query: 603 ETSISQALVELETNSDLKAQLRELYITKAKEIELHNSKSIIIYVPMPKLKAFQKIQIRLV 424
E +SQAL++LETN D+++QL+ELYI KE+EL N +IIIYVP+P+LKAF KI LV
Sbjct: 20 EKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALV 79
Query: 423 RELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEI 247
RELEKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+DA L++LV+PAE+
Sbjct: 80 RELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEV 139
Query: 246 VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 88
VG+RIRVKLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 140 VGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical
protein Y77E11A.9 protein.
Length = 296
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 258 GIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAW 359
GIP+ + S++W+G + C+ +C AW
Sbjct: 5 GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 315 AFSVCWLHVSCGWAWAGSYGH 377
A SV W+ +SC + WAG G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WQTHQSEARWLTTHQSASRQKPTDNY 167
W+ H+SE WLT Q ++ T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WQTHQSEARWLTTHQSASRQKPTDNY 167
W+ H+SE WLT Q ++ T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 244 WQTHQSEARWLTTHQSASRQKPTDNY 167
W+ H+SE WLT Q ++ T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 228 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 97
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 228 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 97
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435
>Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical
protein F27E5.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -1
Query: 615 PDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNSKSIIIY--VPMPKLKAFQK 442
PD ++ + S+ ++ + N DL + R I KA + E+H ++ Y +P + A++
Sbjct: 39 PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98
Query: 441 IQIRLVRELEK 409
I L+K
Sbjct: 99 IGNMTASALDK 109
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 252 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 347
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 252 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 347
RP I D P+W ++ +++++ S+C +C
Sbjct: 842 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 873
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 252 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 347
RP I D P+W ++ +++++ S+C +C
Sbjct: 814 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 845
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 252 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 347
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,853,452
Number of Sequences: 27780
Number of extensions: 302895
Number of successful extensions: 812
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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