Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M07
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.11 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.59 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.59 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 612 DTFETSISQALVELETNSDLKAQLRE 535
           +T  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 300 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 130
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 300 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 130
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 300 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 130
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -1

Query: 612 DTFETSISQALVELETNSD-----LKAQLRELYITKAKEIELHNSKSIIIYVPMPKL 457
           ++F  ++ + L+ LE   +     L +   +  ++ A  +ELHNS    IY  + +L
Sbjct: 429 ESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSFLERL 485


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -1

Query: 612 DTFETSISQALVELETNSD-----LKAQLRELYITKAKEIELHNSKSIIIYVPMPKL 457
           ++F  ++ + L+ LE   +     L +   +  ++ A  +ELHNS    IY  + +L
Sbjct: 467 ESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSFLERL 523


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 615 PDTFETSISQALVELETNSDLKAQLRELYITKAKE 511
           P+TF   ++   V++  N     +L  L +TK  E
Sbjct: 634 PNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAE 668


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = -1

Query: 507 ELHNSKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 328
           EL   KS +  +P+P  +    +      + +KK +G    F   +        + + + 
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSA 611

Query: 327 KQKRPRSRTLTSVYDAIL 274
           K++R  ++TL  V    L
Sbjct: 612 KKERKATKTLAIVLGVFL 629


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NFFSNSRTSLIWIFWNAFS 460
           + F+   T  +W+FW +F+
Sbjct: 210 DIFAMIGTIFLWLFWPSFN 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,699
Number of Sequences: 438
Number of extensions: 3766
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)