Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M06
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    30   0.25 
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   4.1  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   4.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   5.5  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   9.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.5  

>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 263 LEDGPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSI 400
           ++DG    T+G  ++ + F S++ GG   +Y T  +  ESF  T++
Sbjct: 60  IDDGAWSSTLG-PILSQAFASVHPGGTLRVYSTADEADESFEMTAL 104


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 182 EDSDNLWWDAF 214
           ED+  LWWDAF
Sbjct: 346 EDTSKLWWDAF 356


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 311 RYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHH 439
           R  RS Y GG+  +YY  +    ++H    T+       + HH
Sbjct: 32  RICRSSYVGGLHAIYYFPKLNPRNYHKFVDTISRKPTRKLVHH 74


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 YRVYELNKRLQQRTEDSDNLWWDAFATEFF 229
           Y  ++L KRL  R +  D L +   + EFF
Sbjct: 452 YSAHDLKKRLMIRFDGEDGLDYGGLSREFF 481


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
 Frame = +2

Query: 299 TLIPRYF----RSIYEGGVSELYYT 361
           TL+ RYF    RS+Y+  VSEL+ T
Sbjct: 161 TLVCRYFMPVIRSLYDSKVSELHQT 185


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 306 ISVLPIVYLLGPSSKQKVR 250
           I+++PIVY+ G SSK + R
Sbjct: 605 INLIPIVYIFGFSSKHQQR 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,628
Number of Sequences: 5004
Number of extensions: 32319
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)