Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M05
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 150 1e-37
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 148 5e-37
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.071
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 28 0.88
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 0.88
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.2
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 1.2
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 3.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 3.5
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 4.7
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.7
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 25 4.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 6.2
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 6.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.2
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 6.2
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 8.2
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 150 bits (364), Expect = 1e-37
Identities = 68/137 (49%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
Frame = +1
Query: 28 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAXSVAGIDRYPRKVHKRMGK 207
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAV-VAGVERYPLKVTKSMGA 59
Query: 208 NKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFE 381
+I +RS++KPF+K VNYNHLMPTRY+++ K +A K+P +R R + FE
Sbjct: 60 KRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFE 119
Query: 382 ERYKSGKNKWFFQKLRF 432
E+Y+SGK+ WFF LRF
Sbjct: 120 EKYQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 148 bits (358), Expect = 5e-37
Identities = 66/137 (48%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
Frame = +1
Query: 28 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAXSVAGIDRYPRKVHKRMGK 207
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAV-VAGVERYPLKVTKSMGA 59
Query: 208 NKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFE 381
+I KRS++KPF+K +NYNHLMPTRY+++ K + +P++R + + FE
Sbjct: 60 KRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFE 119
Query: 382 ERYKSGKNKWFFQKLRF 432
E+Y++GK+ WFF LRF
Sbjct: 120 EKYQTGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.071
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 19 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 120
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 0.88
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 21 IQDG*DYETWKSGAGPQRPVR 83
++ G + E WKSGAG Q P++
Sbjct: 432 VRGGMEVEVWKSGAGAQLPMK 452
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 0.88
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -3
Query: 414 EPFVLSALVSLFETDPCVETQL---LALSWVF 328
EPF ++ ++S ++ PCV T L + L+W F
Sbjct: 120 EPFQIARIISFEKSRPCVSTNLYDSVRLNWYF 151
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 34 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 117
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 81 VPAAEDQHHFSRFHNLTHLGWI 16
+P +HFSRF + T GWI
Sbjct: 7 IPFTRALYHFSRFRSFTTSGWI 28
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 232 IKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTR 369
+ PF K Y H + T S S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 154 SVAGIDRYPRKVHKRMGKN--KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDL 327
++ +DR R + + K+ +I+ + + P ++G L+ + SFE S KD+
Sbjct: 446 NIIEVDRNSRGIEGFLKKSNDEIYMSTSVSPSIEG--RAKLLNENMRENNSFELSSEKDI 503
Query: 328 KDPAKRKK 351
K P + K+
Sbjct: 504 KSPKRLKR 511
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 4.7
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -3
Query: 228 RPLVNFIFSHPFMNLARVSVDAGDGXSMSVWFVRCALVVILYDNGFTACVPAAED-QHHF 52
RPL++ ++ AR + G+ S +W+ C V+ T A ED Q
Sbjct: 288 RPLLDVSKHDVYLVSARPLEEQGERESQRLWYKTCQAVIARDQTTATETKSAIEDRQREE 347
Query: 51 SRFHNLTHLGW 19
++ + ++ W
Sbjct: 348 AKQREIENVQW 358
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 295 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 429
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 4.7
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 202 GKNKIHKRSKIKPFVKGVNYNHLMPTR-YSVDFSFEKFSAKDLKDP 336
G + I R K P K VNYNH + S +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 134 LSDVPSS*FFTTMALRPAYRPLRTSTTFPG 45
L ++P + FF T+ AY P S T G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 270 NANPLFCRLQL*KIQCKGPKRPS*AQEAAFQH 365
N +P+ QL K++ P++PS A +++F H
Sbjct: 271 NISPVSPFAQLVKLEPTSPQKPSFALDSSFSH 302
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 289 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 405
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 289 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 387
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 202 GKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKF 312
G+ KIH + +++ N+ H+ TR+ F KF
Sbjct: 85 GEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKF 121
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 8.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 32 VRL*NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDML 151
+RL L ++CWS ++ S R +LT ++++L
Sbjct: 94 LRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELL 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,597
Number of Sequences: 5004
Number of extensions: 41001
Number of successful extensions: 119
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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