Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M05
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 187 3e-48
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 187 3e-48
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.4
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 1.4
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 1.4
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 1.4
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p... 29 2.4
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p... 29 2.4
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 5.6
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 5.6
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 5.6
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 5.6
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 7.4
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 7.4
AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical ... 27 7.4
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 7.4
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 7.4
Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical pr... 27 9.8
U53342-6|AAA96218.1| 466|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 187 bits (456), Expect = 3e-48
Identities = 89/137 (64%), Positives = 108/137 (78%), Gaps = 2/137 (1%)
Frame = +1
Query: 28 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAXSVAGIDRYPRKVHKRMGK 207
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAI-IAGIDRYPLKVTKDMGK 59
Query: 208 NKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFE 381
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K + +FE
Sbjct: 60 KKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFE 119
Query: 382 ERYKSGKNKWFFQKLRF 432
ERYK+GKNKWFF KLRF
Sbjct: 120 ERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 187 bits (456), Expect = 3e-48
Identities = 89/137 (64%), Positives = 108/137 (78%), Gaps = 2/137 (1%)
Frame = +1
Query: 28 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAXSVAGIDRYPRKVHKRMGK 207
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAI-IAGIDRYPLKVTKDMGK 59
Query: 208 NKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFE 381
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K + +FE
Sbjct: 60 KKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFE 119
Query: 382 ERYKSGKNKWFFQKLRF 432
ERYK+GKNKWFF KLRF
Sbjct: 120 ERYKTGKNKWFFTKLRF 136
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 34 KIMKPGKVVLVLSGRYAGRKAIVVK 108
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 160 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 309
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 160 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 309
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 160 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 309
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
protein R06F6.8a protein.
Length = 1468
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 113 TTRAHLTNHTDMLXPSPASTDTRARFIKGWEKIKFTSGRKSS 238
+T + + +H + PSP+S D+R+ ++ F G KSS
Sbjct: 1239 STSSSMNHHAPLAPPSPSSCDSRSLAGDCYQNTDFLVGEKSS 1280
>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
protein R06F6.8b protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 113 TTRAHLTNHTDMLXPSPASTDTRARFIKGWEKIKFTSGRKSS 238
+T + + +H + PSP+S D+R+ ++ F G KSS
Sbjct: 1241 STSSSMNHHAPLAPPSPSSCDSRSLAGDCYQNTDFLVGEKSS 1282
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 160 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 309
AG++R V + N+ KR KI + YNHL+PT +D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVPT---IDYSAMK 430
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 356 RSFLRLAGSFRSFALNFSKLKST 288
+SFL L G +R F LNF+++ S+
Sbjct: 1259 QSFLGLVGYYRKFILNFAQIASS 1281
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 356 RSFLRLAGSFRSFALNFSKLKST 288
+SFL L G +R F LNF+++ S+
Sbjct: 1162 QSFLGLVGYYRKFILNFAQIASS 1184
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 356 RSFLRLAGSFRSFALNFSKLKST 288
+SFL L G +R F LNF+++ S+
Sbjct: 1173 QSFLGLVGYYRKFILNFAQIASS 1195
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 329 KTQLSARSCVSTQGSVSKRDTRAERTNGSSRSLG 430
KT+ S S+ S + +DTR + G SRSLG
Sbjct: 376 KTKAKTASGASSVKSFASQDTRNKSNAGDSRSLG 409
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/49 (20%), Positives = 18/49 (36%)
Frame = -3
Query: 162 GDGXSMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 16
G +WF+ + G +PA D H + + H+ W+
Sbjct: 3432 GTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/49 (20%), Positives = 18/49 (36%)
Frame = -3
Query: 162 GDGXSMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 16
G +WF+ + G +PA D H + + H+ W+
Sbjct: 3432 GTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical
protein T12B5.13 protein.
Length = 250
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -3
Query: 261 VVYTFYERLDFRPLVNFIFSHPFMNLARVSVDAGDGXSMSVWFVRCALVVILYDN 97
++Y F ++ F+ +F F + + A + S+ +W +CA + LYD+
Sbjct: 107 IIYAFLQKKSFQKHRQLMFHFHFETILNSELTARNITSLDLW--KCAKKLHLYDS 159
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/49 (20%), Positives = 18/49 (36%)
Frame = -3
Query: 162 GDGXSMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 16
G +WF+ + G +PA D H + + H+ W+
Sbjct: 3432 GTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/49 (20%), Positives = 18/49 (36%)
Frame = -3
Query: 162 GDGXSMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 16
G +WF+ + G +PA D H + + H+ W+
Sbjct: 3432 GTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical
protein C49C3.1 protein.
Length = 706
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 214 FYFFPSFYEPCAGICRCRRRXKHVRMVCQMCPRRNSL 104
FY+F F E AG+ C V +V + RRN L
Sbjct: 490 FYWFIMFDEYAAGVSSCCAVTAEVLIVAYVYGRRNQL 526
>U53342-6|AAA96218.1| 466|Caenorhabditis elegans Hypothetical
protein F01G12.6 protein.
Length = 466
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 35 RL*NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLXPSPASTDTRARFIK 196
RL LE+ W+ +A P S I + H+ PSP T RAR K
Sbjct: 187 RLAELEQH-WAKYVHVRAFDPSSASIEKESTSEAHSTQQQPSPPLTSARARLAK 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,400
Number of Sequences: 27780
Number of extensions: 233221
Number of successful extensions: 673
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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