Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M04
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 28 0.84
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 27 1.9
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 26 3.4
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 3.4
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 4.5
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 4.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 5.9
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 7.9
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.84
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -1
Query: 373 TLFYCIQG*ITTFYNSPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNI-VKYHDEC 197
T+F +Q + F +S+S+ S N N + K + + +K++ EC
Sbjct: 434 TIFGRLQNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEFMDAELKFYKEC 493
Query: 196 YTSRLQVCIRNVK*CYYSILQVN 128
TS+ + I++V C Y Q N
Sbjct: 494 QTSQWEEIIKSVHECIYKWAQTN 516
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 459 ASNVVS-PS-SSGLPPYPTVPSHCSTSQTVAPC 367
ASNV S PS S+ PP T+PS ++SQ+V C
Sbjct: 104 ASNVPSTPSDSTQQPPTNTLPSVSASSQSVETC 136
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 459 ASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSIT 328
+++ S + S P P+ + C+TS ++ P +S P++ T
Sbjct: 94 STSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPT 137
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSIT 328
S + + P PT + C+TS ++ P +S P++ T
Sbjct: 156 SSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPT 194
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 462 RASNVVSPSSSGLPPYPTVPSHCSTSQ 382
+ SN+V+ S SG+ P P++ SH + ++
Sbjct: 195 KLSNIVNASKSGIGPPPSLLSHATLAR 221
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/53 (24%), Positives = 21/53 (39%)
Frame = +2
Query: 260 CERNIPIVITTWSFTNSTQRAWGVIESGNSALDAIEQGATVCEVEQCDGTVGY 418
C + PI +S Q+ + G A ++ +Q CE +CD Y
Sbjct: 28 CPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAY 80
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +2
Query: 344 NSALDAIEQGATVCEVEQCDGTVGYGGSPDEDGETTLDALIMDG 475
N + + QG + + E CD V GG D + L +G
Sbjct: 114 NPTVGNVNQGLEIVKKENCDSMVSIGGGSAHDCAKGIALLATNG 157
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 209 IFYYILINCCFLISMVHCERNIPIVITTWSFTNSTQRAW 325
IF L+N + +S H + N WSF R+W
Sbjct: 435 IFVSALLNAGYRVSGSHAKSNAIKTNAPWSFVWDVLRSW 473
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 477 FPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASR 352
+ S +S + P+ PT+PS+ + + T +P S++ R
Sbjct: 148 YSSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLSHR 189
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 420 PYPTVPSHCSTSQTVAPCSIASRAELPLSITP 325
PY P ST+ VAP SI PL+ P
Sbjct: 639 PYGNNPLFSSTTSQVAPTSIQEPIASPLTSKP 670
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 242 LISMVHCERNIPIVITTWSFTNSTQRAW-GVIESGNSALDAIEQGATVCE 388
L++ V C P V T Q G+IE G DA+ G T+C+
Sbjct: 20 LVTFVTC--GFPNVDETIKIMQGLQNGGAGIIELGIPFSDAVADGPTICK 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,243
Number of Sequences: 5004
Number of extensions: 38424
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -