Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M04
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 91 4e-19
05_03_0458 + 14280953-14281866,14281964-14282912 31 0.36
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 30 0.84
01_01_0369 - 2886060-2886272,2886721-2887434 29 1.9
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 3.4
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713... 28 3.4
11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383... 28 4.5
07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516... 28 4.5
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 27 7.8
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 91.1 bits (216), Expect = 4e-19
Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 4/71 (5%)
Frame = +2
Query: 275 PIVITTWSFTNSTQRAWGVIES----GNSALDAIEQGATVCEVEQCDGTVGYGGSPDEDG 442
P+V++TW F + + AW V+ + G SA+DA+ G + CEV +CDGTVG GGSPDE+G
Sbjct: 71 PVVVSTWPFREAVRAAWEVVSASGGAGCSAVDAVVAGCSACEVLRCDGTVGPGGSPDENG 130
Query: 443 ETTLDALIMDG 475
ETTLDALIMDG
Sbjct: 131 ETTLDALIMDG 141
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 31.5 bits (68), Expect = 0.36
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 456 SNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITP 325
S SPS+S LPP PT P S+S+ AP S + S +P
Sbjct: 96 SPTTSPSASSLPPVPT-PRSASSSKCSAPTSAQTPTRFLSSSSP 138
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -1
Query: 370 LFYCIQG*ITTFYNSPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNIVKYHDECYT 191
L CI +T PS + P S+YY+++ +++ + T ++ CYT
Sbjct: 745 LLDCIVSKVTIVQVPPSVDGKSKSVPSSDYYYDMKYSIDYSTFSTIEMEDTDDLMQSCYT 804
Query: 190 SRL 182
SR+
Sbjct: 805 SRI 807
>01_01_0369 - 2886060-2886272,2886721-2887434
Length = 308
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 477 FPSIMRASNVVSPSSSGLPPYPTVPSH----CSTSQTVAPCSIASRAELP 340
FPS+++ V +P + PP P P H CST + P + +A P
Sbjct: 113 FPSLVQPPRVQAPYVAPPPPPPPPPGHPAYQCSTIRPTTPSLPSLKAAFP 162
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 474 PSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITPQA 319
P + ++ SPSSS PP P P S +AP + S +P+A
Sbjct: 65 PGVPGSAGSPSPSSSSWPPPPPPPPDASQDPDLAPREATTPPASSSSPSPRA 116
>03_04_0143 +
17670103-17670430,17670511-17670785,17670897-17671376,
17671454-17671849,17673215-17673289,17673939-17673960,
17674041-17674129,17675204-17675495,17676019-17676087,
17676394-17676572
Length = 734
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 472 IHNESIQCSLTIFIWTSTISDCSITLLYFTNCCTLFYCIQG 350
+ NE QC+ +F+ I + L +++N TL Y IQG
Sbjct: 71 VSNELFQCT-GVFVVRRVIEPRGLLLPHYSNGATLVYVIQG 110
>11_06_0033 -
19437746-19437916,19438063-19438145,19438266-19438359,
19438478-19438551,19438825-19438861,19440767-19440844,
19440927-19441022,19441719-19441815,19441910-19442015,
19442136-19442208,19442537-19442680,19443241-19443681
Length = 497
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 459 ASNVVSPSSSGLPPYPTVPSHCSTSQTVA 373
AS+++S ++SGLPP P PS S A
Sbjct: 2 ASSLLSSAASGLPPKPQPPSSTPPSSASA 30
>07_03_1421 -
26451012-26451155,26451256-26451322,26451605-26451657,
26451736-26451806,26453340-26453482,26453858-26453919,
26454008-26454100,26454203-26454314,26454432-26454547,
26454625-26454787,26454829-26455349,26455429-26455528,
26457472-26457552,26457666-26457877
Length = 645
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 356 DAIEQGATVCEVEQCDGTVGYGGSPDEDGETTLDALIM 469
+A G+TVC+V DGT G + E L+ +++
Sbjct: 333 EAFRAGSTVCKVVPFDGTSLVNGETQKKAEEVLEEVLL 370
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 474 PSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITP 325
P + +S V PS++ LPP P P P +IA LPL P
Sbjct: 210 PPLPASSEPVDPSAASLPPLPPPP-----PPPPKPANIAGAPGLPLPPPP 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,000
Number of Sequences: 37544
Number of extensions: 208598
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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