Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M04
(478 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50198-2|AAA91260.2| 363|Caenorhabditis elegans Hypothetical pr... 71 3e-13
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.43
Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical pr... 31 0.57
AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical... 31 0.57
AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical... 30 0.75
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 29 1.3
Z81553-8|CAB04497.1| 408|Caenorhabditis elegans Hypothetical pr... 28 3.0
U58752-8|AAB00670.1| 308|Caenorhabditis elegans C-type lectin p... 28 4.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 4.0
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 27 5.3
U20864-2|AAN65320.1| 174|Caenorhabditis elegans Hypothetical pr... 27 5.3
U20864-1|AAC46663.1| 243|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 27 5.3
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 27 5.3
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 27 5.3
Z71258-2|CAA95781.2| 668|Caenorhabditis elegans Hypothetical pr... 27 9.2
U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical pr... 27 9.2
AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA bin... 27 9.2
AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal... 27 9.2
>U50198-2|AAA91260.2| 363|Caenorhabditis elegans Hypothetical
protein R04B3.2 protein.
Length = 363
Score = 71.3 bits (167), Expect = 3e-13
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Frame = +2
Query: 212 FYYILINCCFLISMVHCERNIPIVITTWS---FTNSTQRAWGVIESGNSALDAIEQGATV 382
FY L+ ++ ++ + ++P+VITTW F +T+ A G +E G +
Sbjct: 4 FYIFLLLIPYINGTIN-DDSLPMVITTWGSDGFKKATKNAVDATLLGGRMFGLVE-GLST 61
Query: 383 CEVEQCDGTVGYGGSPDEDGETTLDALIMD 472
CE QCD TVGYGGSPDE+GET LD+L++D
Sbjct: 62 CEALQCDTTVGYGGSPDENGETCLDSLVID 91
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 435 SSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITPQ 322
S LPP TVP +T P + SR E+P+++TP+
Sbjct: 716 SMTLPP-ETVPPKTEAPRTEVPMTGPSRTEVPMTVTPE 752
>Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical
protein W07A12.5 protein.
Length = 278
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 401 DGTVGYGGSPDEDGETTLDALIMDG 475
DG GY GSP + G+ L+ +I DG
Sbjct: 103 DGNDGYPGSPGKSGQDALERMITDG 127
>AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical
protein Y38E10A.4 protein.
Length = 419
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 423 PPYPTVPSHCSTSQTVAPCSIASRA 349
PP P +PS C++S +AP +I+S A
Sbjct: 294 PPTPVIPSMCNSSMIMAPGTISSPA 318
>AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical
protein Y50D7A.8 protein.
Length = 569
Score = 30.3 bits (65), Expect = 0.75
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 456 SNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAEL 343
S + PSSS LPP P PS ST++ V P + L
Sbjct: 429 STINEPSSSSLPP-PQQPSTSSTTEPVPPSRVIDEQTL 465
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 477 FPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAP 370
FP+ RA N P S PP T P+ C T+ T P
Sbjct: 374 FPTT-RAPNTACPPVSTCPPVVTCPASCITTTTEIP 408
>Z81553-8|CAB04497.1| 408|Caenorhabditis elegans Hypothetical
protein F56H6.8 protein.
Length = 408
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 462 RASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASR 352
RA S +S+ P+P +PS+C+ +AP I SR
Sbjct: 282 RAGVQCSMTSTTAIPFPEIPSNCNVGIQMAPGVINSR 318
>U58752-8|AAB00670.1| 308|Caenorhabditis elegans C-type lectin
protein 52 protein.
Length = 308
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -2
Query: 450 VVSPSSSGLPPYP--TVPSHCSTSQT 379
+ S S+S +P +P T+PSHC + T
Sbjct: 146 ICSASASAMPTFPAVTIPSHCPSGYT 171
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -2
Query: 447 VSPSSSGLPPYPTVPSHCST--SQTVAPCSI 361
V+PSSS +P P+ PS ++ S+T AP ++
Sbjct: 1639 VAPSSSSVPSSPSAPSESTSTVSETPAPVNV 1669
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 355
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 355
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>U20864-2|AAN65320.1| 174|Caenorhabditis elegans Hypothetical
protein F32A5.4b protein.
Length = 174
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCS 391
S SS+ LPP PTVP C+
Sbjct: 154 STSSTTLPPKPTVPQFCT 171
>U20864-1|AAC46663.1| 243|Caenorhabditis elegans Hypothetical
protein F32A5.4a protein.
Length = 243
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCS 391
S SS+ LPP PTVP C+
Sbjct: 223 STSSTTLPPKPTVPQFCT 240
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 355
SP+SSG + T+ S +TS AP + S
Sbjct: 1243 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1272
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 355
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 444 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 355
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>Z71258-2|CAA95781.2| 668|Caenorhabditis elegans Hypothetical
protein C01H6.2 protein.
Length = 668
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -2
Query: 468 IMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITPQAL-*VELVNDH 292
++R SN S L P P + + CS S + CS + + L + + L + ++
Sbjct: 134 LIRISNETPRSKQSLAPTPLIVATCSKSPQI--CSYLADFRVNLDESMKNLGNLTALSMA 191
Query: 291 VVITIGIFLSQCTIDI 244
+V T G+++ + ID+
Sbjct: 192 IVCTPGVYMVRTLIDL 207
>U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical
protein C26B9.6 protein.
Length = 306
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = -1
Query: 328 SPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNIVKYHDECYTSRLQVCIRNV 161
S +L R + R YYW + Y KY +ECY +++ C+ +
Sbjct: 198 SKPTLRRSKRTTREKYYWIYESSSFGYY---RYDPKDEKYLEECYCRKMETCVMRI 250
>AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA
binding protein protein.
Length = 346
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 474 PSIMRASNVVSPSSSGLPPYPTVPSH 397
PSIM V P+ + LP PTVP +
Sbjct: 312 PSIMMLYQNVFPTGNSLPAAPTVPGN 337
>AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal
protein 9 protein.
Length = 346
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 474 PSIMRASNVVSPSSSGLPPYPTVPSH 397
PSIM V P+ + LP PTVP +
Sbjct: 312 PSIMMLYQNVFPTGNSLPAAPTVPGN 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,670,077
Number of Sequences: 27780
Number of extensions: 221422
Number of successful extensions: 686
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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