Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M04
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.0  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 286 NYYWNISFTMHHRY 245
           N YWN+   M H+Y
Sbjct: 44  NVYWNVPTFMCHKY 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 432 SGLPPYPTVPSHCSTSQTV 376
           SG+PP P +P    T  T+
Sbjct: 427 SGMPPLPNMPGSMPTMPTM 445


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 472 IHNESIQCSLTIFIWTSTISDCSITLLYFTNCCTLFY 362
           I N ++Q +   ++++  ISD  + +L   N  +LF+
Sbjct: 66  IKNPAMQTATNYYLFSLAISDLILLVLGLPNELSLFW 102


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 322 SSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNIV 215
           SSLS   K    N Y N +   ++ Y K   YKN +
Sbjct: 316 SSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 435  SSGLPPYPTVPSHCSTSQTVAPCSIASRA 349
            +SG     + P HC T Q      IA +A
Sbjct: 1160 TSGGDGVKSAPIHCQTEQDAPEAPIAIKA 1188


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 468 IMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAEL 343
           +M   NV  P+S+       +P H  TS T +   +   ++L
Sbjct: 359 MMEIPNVTLPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDL 400


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 291 VVITIGIFLSQCTIDIK 241
           V ++ GIF S C ID++
Sbjct: 120 VWLSHGIFRSSCDIDVE 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,620
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)