Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M03
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...   121   2e-28
Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical p...    30   0.63 
Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical p...    30   0.63 
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    28   2.5  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    28   2.5  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   7.8  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    27   7.8  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score =  121 bits (292), Expect = 2e-28
 Identities = 59/101 (58%), Positives = 72/101 (71%)
 Frame = +3

Query: 24  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 203
           M  R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+C     KL GI PARP 
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query: 204 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 326
               L   ++TV R YGG L    VK+RI RAFL+EEQKIV
Sbjct: 61  ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101


>Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical
           protein R10E11.3b protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 269 VTENTSINALHCLLAVAETRTLCG 198
           V +NTSI+  HCL   +ET TLCG
Sbjct: 219 VEQNTSIS--HCLRVFSETETLCG 240


>Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical
           protein R10E11.3a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 269 VTENTSINALHCLLAVAETRTLCG 198
           V +NTSI+  HCL   +ET TLCG
Sbjct: 231 VEQNTSIS--HCLRVFSETETLCG 252


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 66   TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKR 245
            +K   R++V      L YQ++ K  + PR  +   +L G+     A  S  C R  T++R
Sbjct: 2336 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2395


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 66   TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKR 245
            +K   R++V      L YQ++ K  + PR  +   +L G+     A  S  C R  T++R
Sbjct: 2339 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2398


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 352 LACCAFRTFTIFCSSIKKALTMRCFTHL*QRTPP*TRFTVFLR*QRRER 206
           L+CCA ++  + C ++++     CF  +  RT P      F   +RRER
Sbjct: 142 LSCCASKS-NMECCALREEEVRACFHEILLRTRPNLNIQGFELRKRRER 189


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 173  TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQ 352
            TT   +R  R +     P E+S  +      S+  E+  R++F+DRR E+    + A+ +
Sbjct: 4237 TTARQSRVYRSSSQVRAPSEESIQKTEALRRSESLESNARKTFVDRRRENVSLSRKASVE 4296

Query: 353  HKVWQKGR 376
             +   + R
Sbjct: 4297 RETNMEAR 4304


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 24  MVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAR 197
           +V +LT +++ +    TK+  +  V  P      + +KKP K+PR     +  +G + A 
Sbjct: 67  VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126

Query: 198 PAERSR 215
           PA + +
Sbjct: 127 PAAKKK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,385,955
Number of Sequences: 27780
Number of extensions: 152559
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)