Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M02
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.2  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   4.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.3  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   8.3  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 KALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQ 323
           K + L  +   I++ K+ GQ TLN        +EK+V  FK+
Sbjct: 174 KLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKE 215


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 276 AHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLGK 428
           A G P I+  +  +K  +  +     + +   C+  L VC+   +G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNVF----FSIKTLCSKSLAVCFSVASGLWVGK 179


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 372  CTSKLEVCYFEVNGFYLG 425
            C+S  E CYF+ + FY G
Sbjct: 4062 CSSWKEPCYFDDSDFYFG 4079


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 304 TYSRSNRPTDVSASALNTD*WPS 372
           T+++ + P+DVSAS LN    PS
Sbjct: 332 TFNQPSGPSDVSASFLNLQAMPS 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,001
Number of Sequences: 5004
Number of extensions: 36572
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)