Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M02
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949...    28   4.7  
02_04_0510 + 23558111-23559613                                         27   6.3  
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636...    27   8.3  
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464...    27   8.3  
01_06_1791 - 39907362-39907453,39907682-39907753,39907941-399080...    27   8.3  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   8.3  

>10_06_0006 -
           9496990-9497592,9497695-9497802,9497884-9497997,
           9498170-9498219,9498346-9498434,9498542-9498738,
           9498877-9499038,9499337-9499455,9499579-9499666,
           9499744-9499849,9499968-9500056,9500167-9500319,
           9500434-9500526,9500625-9500691,9500811-9500923,
           9501544-9501639,9501782-9501961
          Length = 808

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +3

Query: 114 PGQCRYVLIHDYVDR---NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAA 278
           P Q  Y +   ++++   N  +L +   G P  + +     G++    + G  VTL+  A
Sbjct: 679 PSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGA 738

Query: 279 HGFPVIEKDVFAFKQTNGRIG 341
           HG  +   DV +F    GR G
Sbjct: 739 HGRTISSVDVASFGVARGRCG 759


>02_04_0510 + 23558111-23559613
          Length = 500

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 456 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 352
           CY+ R+D  + + +    +S KP +  Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404


>11_04_0179 +
           14562288-14562860,14562874-14563489,14563529-14563658,
           14563694-14564540
          Length = 721

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 187 TDSPRHWFWRTRAEPSLSLKTMDR*H*MELPTAS 288
           T  PR+ +WR   +P+LS K +++    + P+AS
Sbjct: 662 TTMPRNRYWRKPVKPTLSAKKLEQSAQRKPPSAS 695


>07_03_0262 +
           15944259-15944514,15945524-15945597,15946320-15946400,
           15946621-15946713,15946946-15947014,15947578-15947697,
           15948342-15948413,15948624-15948701,15949463-15949654
          Length = 344

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 245 RQWTGDTEWSCPRLPCH*EG--RIRVQTD 325
           R W   T WSC R  C   G  R+R+ T+
Sbjct: 51  RDWWWSTSWSCWRKACRKSGGDRLRILTE 79


>01_06_1791 -
           39907362-39907453,39907682-39907753,39907941-39908045,
           39908212-39908302,39908787-39908849,39909448-39909497,
           39909632-39909716
          Length = 185

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 192 QPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAF 371
           +P++  L+   G  I++   G +T +G+         D F F   NG++  G   GL+  
Sbjct: 47  KPESCTLQAHKGDKIKVHYRGSLT-DGSVFDSSYDRGDPFEFTLGNGQVIKGWDQGLLGM 105

Query: 372 CTSK 383
           C  +
Sbjct: 106 CVGE 109


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 183 QNGQPKALVLEDKSGTIIELKDNG---QVTLNGAAHGFPVIEKDVFAFK 320
           ++ Q + LVL+DKS  + + KD     Q   NG      V +KD+ A +
Sbjct: 363 EDKQKEILVLQDKSNMMQDKKDQNNLEQTNSNGGEEELQVKDKDLVALE 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,145,816
Number of Sequences: 37544
Number of extensions: 270760
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)