Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M02
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   46   8e-09
SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         46   2e-05
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.014
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.91 
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  30   1.2  
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     29   2.1  
SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)                     29   2.8  
SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6)                    29   2.8  
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   28   3.7  
SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)                   27   6.4  

>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 46.4 bits (105), Expect(2) = 8e-09
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
 Frame = +3

Query: 9    RPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPG----QCRYVLIHDYVDRNFTVLL 176
            RPR+  P    P    A++    H+ TFD  +  FPG    +C YVL  D  D  FT++ 
Sbjct: 1632 RPRNWVP----PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMS 1687

Query: 177  Q-------LQNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTNGR 335
            Q        ++G  K +    +  +++++   G   L+G     PV  K++   ++    
Sbjct: 1688 QEDAMILITEDGNVK-IHSSGRVESMVKIDAEGNKILDGYNSELPVQTKNMTVTRE-GPF 1745

Query: 336  IGLGSKYGLMAFCTSKLEVCYFEVNGFYLGKLRG 437
            + L    G+   C  +   C F  + ++ G+L G
Sbjct: 1746 VVLRHDIGIEILCDMEHNACTFNFDKWFHGRLAG 1779



 Score = 30.3 bits (65), Expect(2) = 8e-09
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 435  GLLGDGNNEPYDDFRLPNGK 494
            GLLG  NNE +D+   PNGK
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGK 1830


>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
 Frame = +3

Query: 75  QHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVLLQLQNGQ---------PKALVLEDKSG 227
           +H  TFDG+H+ F G+C Y L  D +  +    L +QN +          +AL+L     
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDKTCGSAGMDCERALLLYIGEK 281

Query: 228 TIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTNGRI--GLGSKYGLMAFCTSKLEVCYF 401
           T  ++  +G + +NGA    P  + +V   K  +  I    G + G+     S ++V   
Sbjct: 282 T-YKISSHGAIRVNGAKVSAPYKDTNVEVSKVHSYTIIRSQGDELGIKFDGASSIQVA-- 338

Query: 402 EVNGFYLGKLRGLLGDGNNEPYDD 473
            V+  Y     GL G+ N  P DD
Sbjct: 339 -VSHKYRNNTCGLCGNNNGIPDDD 361



 Score = 31.1 bits (67), Expect = 0.52
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 78  HIFTFDGKHLTFPGQCRYVL 137
           H  +FDGK  TF G+C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
 Frame = +3

Query: 12   PRSINPLDEMPAKLRAVV-----INGQHIFTFDGKHLTF----PGQCRYVLIHDYVDRNF 164
            P  IN L E    +R +      ++ Q +  FD + +      P   +YVL  D  +  F
Sbjct: 1283 PIRINKLPESLQDIRELAYAECRLSHQKLELFDNQSIKLNQDKPKCVQYVLAQDRNNEVF 1342

Query: 165  TVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFA-FKQTNGR 335
             VL +   QN     ++++     II++  +  VT+NG A    V E    A   +   R
Sbjct: 1343 RVLAKRDQQNRLHLQVIVKITKQVIIKVSPDLTVTVNGKACEDKVCEVSGAARIVRREQR 1402

Query: 336  IGLGSKYGL----MAFCTSKLEVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGK 494
            I +   Y L    + +  ++++V     N F   +LRGL GD N E YD+F+ P G+
Sbjct: 1403 IKVQINYKLSSLHVVYMPNRIQV---HANPFLQNRLRGLCGDMNGEQYDEFQSPTGE 1456


>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 408 NGFYLGKLRGLLGDGNNEPYDDFRLPNGK 494
           N F   +LRGL GD N E YD+F+ P G+
Sbjct: 18  NPFLQNRLRGLCGDMNGEQYDEFQSPTGE 46


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +3

Query: 36   EMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVL-----IHDYVDRNFTVLLQLQNGQPK 200
            + P      ++   H  TFD +  +  GQC YVL       +   + FT+ +++ +   +
Sbjct: 843  DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSR 902

Query: 201  ALVLEDKSGTIIEL 242
             L++     T + L
Sbjct: 903  QLIVSLAGATPVTL 916


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 435 GLLGDGNNEPYDDFRLPNGK 494
           GLLG  NNE +D+   PNGK
Sbjct: 63  GLLGTNNNEHHDEMTKPNGK 82


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = +3

Query: 15  RSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVLLQL 182
           R +N L  + A L  + I G  IF F     +FPG   Y L+H ++D    VLL L
Sbjct: 164 RWVNRLYLLQASLVVIAI-GACIFPF---LRSFPGLLTYALLHGFIDSGSGVLLAL 215


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 384 LEVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGK 494
           L V +     FY G   GL GD +N P +DF  P G+
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGE 222


>SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)
          Length = 309

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 257 LSIVFKLNDGSALVLQNQCLGLS 189
           + I  K N+G ++VL+N CLG++
Sbjct: 32  IEISLKTNEGDSMVLENWCLGMN 54


>SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6)
          Length = 217

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 257 LSIVFKLNDGSALVLQNQCLGLS 189
           + I  K N+G ++VL+N CLG++
Sbjct: 32  IEISLKTNEGDSMVLENWCLGMN 54


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 417 YLGKLRGLLGDGNNEPYDDFRLPNGK 494
           Y G   GL G+ N  P DDF + NG+
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGR 201


>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 45  AKLRAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVLLQLQNGQPKALVLEDKS 224
           A L  + I+  HIF  DG H  FP   + V  H   +   T  ++L       L+LE + 
Sbjct: 247 ASLINIAIHFSHIFAGDGFHFVFPSLLQ-VYAHHQGNDMVTRAIELFASVAPILLLETRL 305

Query: 225 GTIIELKDNGQVTL 266
               EL+ +    L
Sbjct: 306 EDATELEPDDPTAL 319


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 48  KLRAVVINGQHIFTFDGKHLTFPGQCRYVLIHD 146
           K         H  TFDG+  +F G C YV+  D
Sbjct: 23  KATCTAFGDPHYKTFDGRLYSFQGGCNYVMSTD 55


>SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 12  PRSINPLDEMPAKLRAVVINGQHIFTFD-GKHLTFPGQCRYVLIHDYVDRNFTVLLQLQN 188
           PRS++     P+ + +V  NG    TF    H T PG+ R  ++     ++FT +  L  
Sbjct: 229 PRSVSS----PSMMESVNENGLPGSTFKLESHQTSPGERRRHVLRKMTLKDFTFIKVLGK 284

Query: 189 GQPKALVLEDKSGT 230
           G    ++L ++ GT
Sbjct: 285 GSFGKVLLAERKGT 298


>SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)
          Length = 775

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 281 VGSSIQCHLSIVFKLNDGSALVLQNQCLGLSVL 183
           +GSSI CH+  +F+L   +   + NQ   + VL
Sbjct: 435 MGSSINCHVRALFRLTWKACTEVDNQATKMPVL 467


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,099,935
Number of Sequences: 59808
Number of extensions: 295364
Number of successful extensions: 657
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)