Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M02
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    30   1.1  
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    29   2.4  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      29   2.4  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   4.3  
AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine re...    27   5.7  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    27   7.5  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    27   7.5  
Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate cyc...    27   9.9  

>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 16  DRSTHLTKCLLNFALWSSTDSTFSRSTANT 105
           D+ TH+T   ++ AL SSTDST S+S   T
Sbjct: 850 DKETHVTTTPVSVALPSSTDSTQSKSAIPT 879


>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
           protein Y80D3A.2 protein.
          Length = 1467

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +3

Query: 6   RRPRSINPLDEMPAKLRAVVINGQHI-----FTFDGKHLTFPGQCRYVLIHDYVDRNFTV 170
           RRP  +  L+E P      VI  ++I     +T DG         +++ +HDY+ RNF  
Sbjct: 423 RRPNQLTQLNEKPLFPTEKVIWDENIIPYENYTGDGVLALDKLNLQFLTLHDYLLRNFN- 481

Query: 171 LLQLQNGQPKALVLED 218
           L QL++       LED
Sbjct: 482 LFQLESTYEIRQDLED 497


>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 114 PGQCRYVLIHDYVDRNFTVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGF 287
           P QCR     DY  + +  +++    +GQP     E+K   +I+    G++  N   HG 
Sbjct: 672 PRQCRDF---DYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQ----GELQFNQNQHGI 724

Query: 288 PVIEKDVFAFKQTNG 332
            VIE+ +   K T G
Sbjct: 725 EVIEQFLQNIKSTIG 739


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 24  NPLDEMPAKLRAVVING---QHIFTFDGKHLTFPGQCRYV 134
           +PLD  P K+ + +IN    ++  TFDG+   F   CR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 258 PVHCL*AQ*WFRSCPP 211
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 258 PVHCL*AQ*WFRSCPP 211
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 183 QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTN 329
           Q+G PK+ + +D+SG      D G+   NG A GFP++E     +  TN
Sbjct: 98  QSGSPKSCLWDDQSG------DAGK--YNGFAPGFPLLEIGSCVYVPTN 138


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 15  RSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVL 137
           R  N   +  A     +    H+ T+DG   T PG+  YVL
Sbjct: 840 RMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVL 880



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 435  GLLGDGNNEPYDDFRLPNG 491
            GLLG  NN+P DD   P+G
Sbjct: 1036 GLLGTYNNDPADDLTTPSG 1054


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 196  GCPFCSCRSTVKFLST*SCINT*RHCPGKV---KCLPSNVKMCCPLM 65
            GCP C CRS  +FL+     N  R  P K    +C P  V  C P M
Sbjct: 1230 GCPICDCRSPCEFLNC-PAGNVCRMIPVKCTTPECRP--VAKCIPNM 1273


>Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical
           protein F49C5.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 285 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 425
           FP+     + F  TN  IG      L +F     E C++  N  YLG
Sbjct: 125 FPLWHMKKYRFNPTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLG 171


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 358 PYLEPRPIRPLVCLNANTSFSMT 290
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 358 PYLEPRPIRPLVCLNANTSFSMT 290
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine
           receptor, class x protein122 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 285 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 425
           FP+     + F  TN  IG+     + +F     E C++  N  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAVFSFAVLLPEGCHYLFNRDYLG 171


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 96  GKHLTFPGQCRYVLIHDYVD 155
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 96  GKHLTFPGQCRYVLIHDYVD 155
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


>Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical
           protein T04D3.4 protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 54  RAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVL-LQLQNGQPKALVLEDKSGT 230
           + V++ G  +F  +GK++ +        + + ++RN  +  +Q  +G    ++L     +
Sbjct: 305 KTVLLKGSMVFIDEGKYILYMCSVNVTTVRELIERNLHLSDMQRHDGTRDVIMLNQSRMS 364

Query: 231 IIEL 242
            +EL
Sbjct: 365 QVEL 368


>AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 54  RAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVL-LQLQNGQPKALVLEDKSGT 230
           + V++ G  +F  +GK++ +        + + ++RN  +  +Q  +G    ++L     +
Sbjct: 305 KTVLLKGSMVFIDEGKYILYMCSVNVTTVRELIERNLHLSDMQRHDGTRDVIMLNQSRMS 364

Query: 231 IIEL 242
            +EL
Sbjct: 365 QVEL 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,891,805
Number of Sequences: 27780
Number of extensions: 222118
Number of successful extensions: 636
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)