Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_M01
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    30   0.26 
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.4  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.4  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.4  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.4  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   5.6  

>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 49  NPSISSNKKTSTAGYRFFPK-SSTTTGLAPPASCGFPRPSPGRRSTL 186
           NPS +S     ++G  F P  +     L  P   GFP PSPG  + L
Sbjct: 187 NPSDASAAARFSSGTGFTPGVNEPFRSLLTPTGAGFPAPSPGTANLL 233


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 YVVRLIYVAILFSIVFNI-FYRFIQSPVCMVVMCEIKEINLHKEHYLVYYLWNI 511
           Y + +IY A+ F I   +  Y  I+    ++ +C +  I+L+K+ Y+V  ++++
Sbjct: 179 YRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSVYWISLYKDVYVVSEIFDM 232


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 YVVRLIYVAILFSIVFNI-FYRFIQSPVCMVVMCEIKEINLHKEHYLVYYLWNI 511
           Y + +IY A+ F I   +  Y  I+    ++ +C +  I+L+K+ Y+V  ++++
Sbjct: 179 YRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSVYWISLYKDVYVVSEIFDM 232


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 YVVRLIYVAILFSIVFNI-FYRFIQSPVCMVVMCEIKEINLHKEHYLVYYLWNI 511
           Y + +IY A+ F I   +  Y  I+    ++ +C +  I+L+K+ Y+V  ++++
Sbjct: 151 YRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSVYWISLYKDVYVVSEIFDM 204


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 YVVRLIYVAILFSIVFNI-FYRFIQSPVCMVVMCEIKEINLHKEHYLVYYLWNI 511
           Y + +IY A+ F I   +  Y  I+    ++ +C +  I+L+K+ Y+V  ++++
Sbjct: 179 YRLFVIYCALGFGITRTVPKYLMIKGISIVIALCSVYWISLYKDVYVVSEIFDM 232


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 41  YFAIHPSVQIKKPPLLDIGFSQRAPRRPVLRH 136
           Y+A+ P VQ+  P  L + F + A R+ +L +
Sbjct: 133 YYALKPDVQVIAPWRLPVFFERFAGRKDLLEY 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,457
Number of Sequences: 5004
Number of extensions: 45393
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)