Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_M01
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0107 - 11197013-11197244,11197384-11197514 31 0.81
07_03_0554 - 19401092-19402540 29 1.9
05_04_0200 + 18986183-18986330,18986434-18986513,18987237-189874... 29 1.9
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 29 2.5
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 29 2.5
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 29 3.3
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 3.3
03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672... 28 5.7
12_01_0720 + 6347765-6347839,6347936-6348004,6348221-6348256,634... 27 7.5
04_03_0372 + 15068405-15070000 27 7.5
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 10.0
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 27 10.0
>01_02_0107 - 11197013-11197244,11197384-11197514
Length = 120
Score = 30.7 bits (66), Expect = 0.81
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 218 EHIARSKDTLHKVDRRPGEGRGNPQDAGG 132
EHI R D + R GEGRG+P + G
Sbjct: 2 EHIERDADRVEVEHREVGEGRGDPPEKSG 30
>07_03_0554 - 19401092-19402540
Length = 482
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +1
Query: 19 ISSTIKTLFCNPSISSNKKTSTAGYRFFPKSSTTTGL 129
+++ + +FC P++ +++ GY +FP S++ L
Sbjct: 111 VAALVTDIFCTPALEVSRELGVPGYVYFPCSASMLAL 147
>05_04_0200 +
18986183-18986330,18986434-18986513,18987237-18987431,
18989147-18989233,18990011-18990061,18990211-18990390,
18990863-18991096
Length = 324
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 130 APPASCGFPRPSPGRRSTLWRVSLLRAMCSV 222
+PP +PRP P RR L V LL A+ +V
Sbjct: 21 SPPRRIPWPRPLPSRRGALRPVKLLPAISAV 51
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 212 IARSKDTLHKVDRRPGEGRGNPQDAGGARPVVVELFGKNLYPAVEVF 72
IA +K+ +H + P G P D + ++ FGK+ P+V F
Sbjct: 265 IAINKECVHHILGLPIGGMEFPTDCDAGKSFILSKFGKSALPSVRFF 311
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +1
Query: 19 ISSTIKTLFCNPSISSNKKTSTAGYRFFPKSSTTTGLAPPASCGFPRPSPGRRST 183
+SS+ +T N SISS T P ++T +AP S RP P R ST
Sbjct: 90 MSSSNRTAVLNTSISSVSSRPTT-----PSRRSSTVVAPKQSIAASRPVPARSST 139
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 53 HPSVQIKKPPLLDIGFSQRAPRRPVLRHPHPADS 154
HP+V PP + S RAP++P + P PA +
Sbjct: 607 HPTVPSTHPPGVADRNSTRAPKQPTNQRPSPASN 640
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 212 IARSKDTLHKVDRRPGEGRGNPQDAGGARPVVVELFGKNLYPAVEVF 72
IA +K+ +H + P G P D + ++ FGK+ P+V F
Sbjct: 221 IAINKECVHYILGLPIGGMEFPTDCDAGKSFILSKFGKSALPSVRFF 267
>03_03_0242 +
15765726-15765965,15766703-15766874,15767056-15767209,
15767287-15767350,15767533-15767640,15767817-15767942,
15768037-15768269,15768565-15768787
Length = 439
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 191 LHKVDRRPGEGRGNPQDAGGA 129
L K RRPG+ + + +DAGGA
Sbjct: 50 LPKCSRRPGQAQADGEDAGGA 70
>12_01_0720 +
6347765-6347839,6347936-6348004,6348221-6348256,
6348342-6348647,6348887-6348901
Length = 166
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 109 SSTTTGLAPPASCGFPRPSPGRRSTLWRV-SLLRAMCSVHCHLSPALLQAISVMI 270
+STT GF R SP R L RV S + +CS+ + +LL ++V +
Sbjct: 36 ASTTIQHLGTGIAGFVRHSPPRLPQLTRVSSSMCRLCSIRDDIGRSLLAGVTVSV 90
>04_03_0372 + 15068405-15070000
Length = 531
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Frame = +2
Query: 38 HYFAIH-PSVQIKKPPLLDIGFSQRAPRR---------PVLRHPHPADSHDLHQVVGPPC 187
H H PS+ + L + + RAPRR VLR PHP +S L + PP
Sbjct: 119 HLAGYHRPSIADCRDGRLLVESTDRAPRRLGINTPYRYTVLRPPHPRESVQLLPPLPPPP 178
Query: 188 GG 193
GG
Sbjct: 179 GG 180
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 49 NPSISSNKKTSTAGYRFFPKSSTTTGLAPPASCGFPRPSP 168
+P S+N ++ PK ++TT L S FP P P
Sbjct: 691 HPMSSANGPYTSGNSAAIPKVNSTTSLQSTPSTSFPSPVP 730
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 49 NPSISSNKKTSTAGYRFFPKSSTTTGLAPPASCGFPRPSP 168
+P S+N ++ PK ++TT L S FP P P
Sbjct: 779 HPMSSANGPYTSGNSAAIPKVNSTTSLQSNPSTSFPSPMP 818
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,907
Number of Sequences: 37544
Number of extensions: 321137
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -