Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L24
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    54   2e-08
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   2.8  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   3.7  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   3.7  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
 Frame = +3

Query: 255 DLETYAASYTGFAKLYRLMFVADHCPSLRMEALKMAISYVMS-TYNVSLYQTLHKKLAEA 431
           +L+ Y   Y  ++K++R +FVA +   LR   +  AI  +   TYN+ LYQ+L ++  + 
Sbjct: 11  ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDC 70

Query: 432 VATAGLPDVAGSQDIPVLDTMWVESKTKKAAIKLEKLDTDLRNYKTNSIEESIR 593
                L            D  WVES T      LE+L  +L+ YK N I ESIR
Sbjct: 71  FENEQL------------DVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIR 112


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 DNENNETECYLVENPTLDLETYAASY 281
           D  NN+TE  L+ENP ++LET    Y
Sbjct: 252 DINNNDTELGLIENP-MNLETPKIDY 276


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 351 LKMAISYVMSTYNVSLYQTL 410
           +++A+  V++TYNVSL QT+
Sbjct: 477 IRLALFCVLTTYNVSLSQTI 496


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 237 VENPTLDLETYAASYTGFAKLYRLMFVADHCPSLRMEALKMAISYVMSTYNVSLYQTLHK 416
           V NP  D         G    Y L  + D   +++ ++  + I++V S  + +L   +HK
Sbjct: 407 VSNPYKDYSYLFLFAGGVGVSYILPIILD---TIKKQSRTVHITFVWSARSSALLNIVHK 463

Query: 417 KLAEAV 434
            L EAV
Sbjct: 464 SLCEAV 469


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 253 WIWRHMPRPI 282
           WIW H P+PI
Sbjct: 691 WIWNHSPKPI 700


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 505 DSTHIVSRTGISCDPATSGKPA 440
           D   +VS T  S +PA+S KPA
Sbjct: 311 DDPFVVSNTANSDEPASSSKPA 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,326
Number of Sequences: 5004
Number of extensions: 53096
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)