Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L24
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91...    71   7e-13
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888...    28   5.0  
06_01_0063 - 534138-534605                                             28   5.0  
02_05_0114 + 25958834-25961296                                         28   5.0  

>03_01_0115 -
           915142-915321,915397-915631,916301-916386,916474-916590,
           917271-917591,918386-918772
          Length = 441

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
 Frame = +3

Query: 252 LDLETYAASYTGFAKLYRLMFVADHC--PSLRMEALKMAISYVMSTYNVSLYQTLHKKLA 425
           LD+E YAA YTG  +L RL+F+A+ C   ++ +EAL+MA   +    +   ++ +  K+ 
Sbjct: 34  LDVEAYAAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTMFHREVTNKIN 93

Query: 426 EAVATAGLPDVAGSQDIPVLDTMWVESKTKKAAIKLEKLDTDLRNYKTNSIEESIRRGPD 605
             +     P  A       LD  W +S  ++A  + EKL+++L  Y+TN I+ESIR G +
Sbjct: 94  GRLG----PKYA-------LDQAWTDSVNRRAEQRKEKLESELNGYRTNLIKESIRMGYN 142

Query: 606 D 608
           D
Sbjct: 143 D 143


>11_06_0621 +
           25587476-25587604,25588230-25588423,25588800-25588874,
           25589434-25591852
          Length = 938

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 449 QACSSHCFSKFFVKCLVKAYIVC 381
           + C++ C   F V CL+KA I C
Sbjct: 263 RTCATPCSLSFMVDCLIKACITC 285


>06_01_0063 - 534138-534605
          Length = 155

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 240 ENPTLDLETYAASYTGFAKLYRLMFVADHCPSLRMEALKMAI 365
           ++PT     Y  SY+  ++  +L+ + DH P+LR +AL  ++
Sbjct: 42  DSPTAVDAEYDGSYSYSSQSSQLLELDDHSPALRFDALSSSL 83


>02_05_0114 + 25958834-25961296
          Length = 820

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 449 QACSSHCFSKFFVKCLVKAYIVC 381
           + C++ C   F V CL+KA I C
Sbjct: 145 RTCATPCSLSFMVDCLIKACITC 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,340
Number of Sequences: 37544
Number of extensions: 310750
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)