Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L24
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.3  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.4  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   7.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.4  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 237 LNNTLFHCSHCPQV 196
           L NTL H  HCP++
Sbjct: 466 LCNTLHHWHHCPEI 479


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 222 FHCSHCPQVGRQPA*VQLH 166
           +HCSHC +   Q A ++ H
Sbjct: 38  YHCSHCDRQFVQVANLRRH 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 538 FSSFI-AAFLVLDSTHIVSRTGISCDPATSG 449
           F++ I AAFL L ST +    G SC   + G
Sbjct: 7   FTTLINAAFLCLASTILSESAGTSCKWLSEG 37


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 329 SIT*NGSFKNGYFLRYVNIQCKPLPN 406
           S+T      +G+F  +V +Q +PL N
Sbjct: 298 SVTSVRLISSGFFDNFVTVQIQPLKN 323


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 437 SHCFSKFFVKCLVKAYIVC*HNVRN 363
           S  FS F    LV +YIV   N+RN
Sbjct: 63  SGLFSVFSFLILVSSYIVILVNLRN 87


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 531 LEKLDTDLRNYKTNSIEES 587
           LEK  TD  N KTN+ E S
Sbjct: 211 LEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 531 LEKLDTDLRNYKTNSIEES 587
           LEK  TD  N KTN+ E S
Sbjct: 211 LEKFFTDYCNSKTNTGEYS 229


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 98  TLTVESDYFHLYQIPAKKNVR 160
           TL  E+D + + QI AKK ++
Sbjct: 236 TLLSETDIWEVEQILAKKEIK 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,529
Number of Sequences: 438
Number of extensions: 3852
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)