Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L23
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    82   5e-17
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   2.7  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    26   4.7  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.2  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   8.1  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
 Frame = +2

Query: 137 MAELLLDPNIRVWVFLPIVIITFLVGIVRHYVSIIL-SSQKKIELLQVQDSQVMIRARLL 313
           M +LLLDP +R WV LPI+ +  L+GI+RH  +I+L SS KK+   ++++ +++ RA  L
Sbjct: 1   MQKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYAL 60

Query: 314 RE-NGKYLPRQSFAMRRHWFNNEETG-YFK-VQKRTATSQNPMTD----PGMMTDMLKGN 472
           R  +   LP    A +     + ++G Y K V      + NP+ D     G+M  M KGN
Sbjct: 61  RACSNSLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAANPLMDDKTLEGLMESM-KGN 119

Query: 473 VTNVLPMIVIGGWINWMFSGLL 538
           +  V+P  +I  WIN  FSG +
Sbjct: 120 MLMVVPQTIIMTWINEFFSGFI 141



 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 534 YFTTKVPFPLTLRFK 578
           +   K+PFPLTLRFK
Sbjct: 140 FILLKLPFPLTLRFK 154


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 173 WVFLPIV-IITFLVGIVRHYVS 235
           W+ LPI  I+  LVGI++HY++
Sbjct: 460 WIDLPIAFILGCLVGILQHYIA 481


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -2

Query: 341 VEVDTYHSR----GAI*HGSLPDYPEPEEALFSFEKIK*ST 231
           V++D + SR    G + +G  PD+PE +     F +I  ST
Sbjct: 42  VKIDMFESRPVPFGLVRYGVAPDHPEVKHVEHKFSEIAEST 82


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 173 WVFLPIVIITFLVGIVRHYVSI 238
           WVFL + +I  ++ ++ +Y+SI
Sbjct: 64  WVFLNLGVIGIIITVIIYYISI 85


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 457 VCHHSRVSHWVL*CGSSFLNFEITSFLIVEPVSPHCK 347
           +CH    +  +  C  +F +F I  +L   P+ P C+
Sbjct: 31  ICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACR 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,478
Number of Sequences: 5004
Number of extensions: 51315
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)