Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L23
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0610 + 18944084-18944244,18944471-18944564,18944809-189449...   100   1e-21
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    28   4.8  
06_02_0106 - 11898493-11901471                                         27   8.3  

>09_04_0610 +
           18944084-18944244,18944471-18944564,18944809-18944928,
           18945012-18945060,18945985-18946084,18946196-18946257,
           18946365-18946426,18947080-18947187
          Length = 251

 Score =  100 bits (239), Expect = 1e-21
 Identities = 50/137 (36%), Positives = 86/137 (62%), Gaps = 5/137 (3%)
 Frame = +2

Query: 143 ELLLDPNIRVWVFLPIVIITFLVGIVRHYVSIIL---SSQKKIELLQVQDSQVMIRARLL 313
           EL+LD  IR WV +P+ ++  L+G++R++V+ ++   S+    +   V++ QV+IRAR L
Sbjct: 4   ELVLDTAIRDWVLVPLSVVMVLIGVLRYFVAKLMRSPSASPSPDPKLVKEGQVVIRARNL 63

Query: 314 RENGKYLPRQSFAMRRHWFNNEETGYFKVQKRTA-TSQNPM-TDPGMMTDMLKGNVTNVL 487
           R N +Y+P ++F  R+ ++ NEE G   V K  A  +Q  M +DP M  DM+K N++ ++
Sbjct: 64  RINSQYIPAKAFKSRKVYYTNEENGLLHVPKEEAQKAQAAMFSDPNMAMDMMKKNLSMIV 123

Query: 488 PMIVIGGWINWMFSGLL 538
           P  +   W+N+ FSG +
Sbjct: 124 PQTLTFAWVNFFFSGFV 140


>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 136 NGRTSFRSKYTCMGVSPYSYHYFLSRNSKTLCVDYFIFSKEN 261
           NGR  +R+++T +   PYS  +F  R    LC D   F + N
Sbjct: 850 NGR--YRTEFTYLPSIPYSASWFDQRTLINLCADLCRFIRRN 889


>06_02_0106 - 11898493-11901471
          Length = 992

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 124 GF*KNGRTSFRSKYTCMGVSPYSYHY 201
           GF + GRT FRS     G++P   HY
Sbjct: 860 GFLEQGRTLFRSMLADHGITPRMEHY 885


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,613
Number of Sequences: 37544
Number of extensions: 282512
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)