Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L23
         (585 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    26   0.78 
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    26   0.78 
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    26   0.78 
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    26   0.78 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   4.2  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   5.5  
X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    23   9.6  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   9.6  

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 357 GDTGSTMRKLVISKFRKELP 416
           G TGS M  L+ISK R+E P
Sbjct: 37  GGTGSGMGTLLISKIREEYP 56


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 357 GDTGSTMRKLVISKFRKELP 416
           G TGS M  L+ISK R+E P
Sbjct: 37  GGTGSGMGTLLISKIREEYP 56


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 357 GDTGSTMRKLVISKFRKELP 416
           G TGS M  L+ISK R+E P
Sbjct: 37  GGTGSGMGTLLISKIREEYP 56


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 357 GDTGSTMRKLVISKFRKELP 416
           G TGS M  L+ISK R+E P
Sbjct: 37  GGTGSGMGTLLISKIREEYP 56


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 507 PPITIMGRTLVTLPFNMSVIIPGSVIGFCDVAV 409
           PP+TI+    + +P  + + +P  VI F   A+
Sbjct: 624 PPVTILVPYPIIIPLPLPIPVPIPVIDFLKAAL 656


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 384 VSSLLNQCRRIANDCRGRYLPFSRS 310
           +SSL +    I+ D RG  +P+SRS
Sbjct: 725 ISSLKHPPSHISIDVRGTAVPYSRS 749


>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 356 RRHWFNNEETGYFKVQKRTATSQNPMTDPGMMTDMLKGNVTNV 484
           R+ W++ +    FK ++   T  N      + +D LKG V  V
Sbjct: 27  RKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEV 69


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGYF 394
           I +RLLR+NGK L     A  +    +E T +F
Sbjct: 705 ILSRLLRQNGKILKANLRAFIKESPMHEITDFF 737


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,911
Number of Sequences: 2352
Number of extensions: 12330
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55927431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)