Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L23
(585 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK222953-1|BAD96673.1| 219|Homo sapiens 30 kDa protein variant ... 197 3e-50
BC022807-1|AAH22807.1| 261|Homo sapiens transmembrane protein 1... 196 4e-50
AF157321-1|AAF67487.1| 261|Homo sapiens 30 kDa protein protein. 196 4e-50
AK172843-1|BAD18807.1| 221|Homo sapiens protein ( Homo sapiens ... 196 6e-50
AF225987-1|AAK00219.1| 2000|Homo sapiens voltage-gated sodium ch... 31 4.0
AF225986-1|AAK00218.1| 1951|Homo sapiens voltage-gated sodium ch... 31 4.0
BT020100-1|AAV38903.1| 291|Homo sapiens sine oculis homeobox ho... 29 9.1
BC024033-1|AAH24033.1| 291|Homo sapiens sine oculis homeobox ho... 29 9.1
AF332198-1|AAK16583.1| 291|Homo sapiens SIX2 protein. 29 9.1
AF332197-1|AAK16582.1| 291|Homo sapiens SIX2 protein. 29 9.1
AF332196-1|AAK16581.1| 287|Homo sapiens SIX2 protein. 29 9.1
AF323498-1|AAK06773.1| 291|Homo sapiens SIX2 protein. 29 9.1
AF136940-1|AAF69032.1| 291|Homo sapiens sine oculis homeobox ho... 29 9.1
AF136939-1|AAF69031.1| 291|Homo sapiens sine oculis homeobox ho... 29 9.1
>AK222953-1|BAD96673.1| 219|Homo sapiens 30 kDa protein variant
protein.
Length = 219
Score = 197 bits (480), Expect = 3e-50
Identities = 89/132 (67%), Positives = 108/132 (81%)
Frame = +2
Query: 143 ELLLDPNIRVWVFLPIVIITFLVGIVRHYVSIILSSQKKIELLQVQDSQVMIRARLLREN 322
ELLLD NIR+WV LPIVIITF VG++RHYVSI+L S KK+ QV DSQV+IR+R+LREN
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRILREN 64
Query: 323 GKYLPRQSFAMRRHWFNNEETGYFKVQKRTATSQNPMTDPGMMTDMLKGNVTNVLPMIVI 502
GKY+P+QSF R+++FNN E G+FK KR +PMTDP M+TDM+KGNVTNVLPMI+I
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124
Query: 503 GGWINWMFSGLL 538
GGWIN FSG +
Sbjct: 125 GGWINMTFSGFV 136
Score = 37.1 bits (82), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 534 YFTTKVPFPLTLRFKPM 584
+ TTKVPFPLTLRFKPM
Sbjct: 135 FVTTKVPFPLTLRFKPM 151
>BC022807-1|AAH22807.1| 261|Homo sapiens transmembrane protein 111
protein.
Length = 261
Score = 196 bits (479), Expect = 4e-50
Identities = 89/132 (67%), Positives = 108/132 (81%)
Frame = +2
Query: 143 ELLLDPNIRVWVFLPIVIITFLVGIVRHYVSIILSSQKKIELLQVQDSQVMIRARLLREN 322
ELLLD NIR+WV LPIVIITF VG++RHYVSI+L S KK+ QV DSQV+IR+R+LREN
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 323 GKYLPRQSFAMRRHWFNNEETGYFKVQKRTATSQNPMTDPGMMTDMLKGNVTNVLPMIVI 502
GKY+P+QSF R+++FNN E G+FK KR +PMTDP M+TDM+KGNVTNVLPMI+I
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124
Query: 503 GGWINWMFSGLL 538
GGWIN FSG +
Sbjct: 125 GGWINMTFSGFV 136
Score = 37.1 bits (82), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 534 YFTTKVPFPLTLRFKPM 584
+ TTKVPFPLTLRFKPM
Sbjct: 135 FVTTKVPFPLTLRFKPM 151
>AF157321-1|AAF67487.1| 261|Homo sapiens 30 kDa protein protein.
Length = 261
Score = 196 bits (479), Expect = 4e-50
Identities = 89/132 (67%), Positives = 108/132 (81%)
Frame = +2
Query: 143 ELLLDPNIRVWVFLPIVIITFLVGIVRHYVSIILSSQKKIELLQVQDSQVMIRARLLREN 322
ELLLD NIR+WV LPIVIITF VG++RHYVSI+L S KK+ QV DSQV+IR+R+LREN
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 323 GKYLPRQSFAMRRHWFNNEETGYFKVQKRTATSQNPMTDPGMMTDMLKGNVTNVLPMIVI 502
GKY+P+QSF R+++FNN E G+FK KR +PMTDP M+TDM+KGNVTNVLPMI+I
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124
Query: 503 GGWINWMFSGLL 538
GGWIN FSG +
Sbjct: 125 GGWINMTFSGFV 136
Score = 37.1 bits (82), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 534 YFTTKVPFPLTLRFKPM 584
+ TTKVPFPLTLRFKPM
Sbjct: 135 FVTTKVPFPLTLRFKPM 151
>AK172843-1|BAD18807.1| 221|Homo sapiens protein ( Homo sapiens
cDNA FLJ24004 fis, clone KAT01090, highly similar to
Homo sapiens 30 kDa protein (LOC55831). ).
Length = 221
Score = 196 bits (477), Expect = 6e-50
Identities = 89/132 (67%), Positives = 107/132 (81%)
Frame = +2
Query: 143 ELLLDPNIRVWVFLPIVIITFLVGIVRHYVSIILSSQKKIELLQVQDSQVMIRARLLREN 322
ELLLD NIR+WV LPIVIITF VG +RHYVSI+L S KK+ QV DSQV+IR+R+LREN
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGTIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 323 GKYLPRQSFAMRRHWFNNEETGYFKVQKRTATSQNPMTDPGMMTDMLKGNVTNVLPMIVI 502
GKY+P+QSF R+++FNN E G+FK KR +PMTDP M+TDM+KGNVTNVLPMI+I
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124
Query: 503 GGWINWMFSGLL 538
GGWIN FSG +
Sbjct: 125 GGWINMTFSGFV 136
Score = 37.1 bits (82), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 534 YFTTKVPFPLTLRFKPM 584
+ TTKVPFPLTLRFKPM
Sbjct: 135 FVTTKVPFPLTLRFKPM 151
>AF225987-1|AAK00219.1| 2000|Homo sapiens voltage-gated sodium channel
alpha subunit SCN3A protein.
Length = 2000
Score = 30.7 bits (66), Expect = 4.0
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +2
Query: 155 DPNIRVWVFLPIVIITFLVGIVRHYVSIILSS 250
DP++ ++ F+ +II+FLV +V Y+++IL +
Sbjct: 1743 DPSVGIFFFVSYIIISFLV-VVNMYIAVILEN 1773
>AF225986-1|AAK00218.1| 1951|Homo sapiens voltage-gated sodium channel
alpha subunit splice variant SCN3A-s protein.
Length = 1951
Score = 30.7 bits (66), Expect = 4.0
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +2
Query: 155 DPNIRVWVFLPIVIITFLVGIVRHYVSIILSS 250
DP++ ++ F+ +II+FLV +V Y+++IL +
Sbjct: 1694 DPSVGIFFFVSYIIISFLV-VVNMYIAVILEN 1724
>BT020100-1|AAV38903.1| 291|Homo sapiens sine oculis homeobox
homolog 2 (Drosophila) protein.
Length = 291
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 98 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 151
>BC024033-1|AAH24033.1| 291|Homo sapiens sine oculis homeobox
homolog 2 (Drosophila) protein.
Length = 291
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 98 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 151
>AF332198-1|AAK16583.1| 291|Homo sapiens SIX2 protein.
Length = 291
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 98 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 151
>AF332197-1|AAK16582.1| 291|Homo sapiens SIX2 protein.
Length = 291
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 98 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 151
>AF332196-1|AAK16581.1| 287|Homo sapiens SIX2 protein.
Length = 287
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 94 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 147
>AF323498-1|AAK06773.1| 291|Homo sapiens SIX2 protein.
Length = 291
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 98 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 151
>AF136940-1|AAF69032.1| 291|Homo sapiens sine oculis homeobox
homolog 2 protein.
Length = 291
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 98 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 151
>AF136939-1|AAF69031.1| 291|Homo sapiens sine oculis homeobox
homolog 2 protein.
Length = 291
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 296 IRARLLRENGKYLPRQSFAMRRHWFNNEETGY-FKVQKRTAT----SQNPMTDP 442
+R R L GKY R+ F + R ++ EET Y FK + R+ + NP P
Sbjct: 98 LRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSP 151
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,233,127
Number of Sequences: 237096
Number of extensions: 1667825
Number of successful extensions: 2566
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2566
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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