Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L23
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical ...   182   2e-46
Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    31   0.60 
U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine rece...    30   1.1  
Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical p...    27   9.8  

>AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical
           protein Y62E10A.10 protein.
          Length = 234

 Score =  182 bits (442), Expect = 2e-46
 Identities = 82/135 (60%), Positives = 105/135 (77%), Gaps = 1/135 (0%)
 Frame = +2

Query: 137 MAELLLDPNIRVWVFLPIVIITFLVGIVRHYVSIILSSQKKIELLQVQDSQVMIRARLLR 316
           M +LLLDP IR WVFLPIV+ITF +GI+RHYVS++L ++KK+EL  + D Q ++RARLLR
Sbjct: 1   MTDLLLDPAIRTWVFLPIVVITFFIGILRHYVSLLLMNKKKVELENIADGQYLLRARLLR 60

Query: 317 ENGKYLPRQSFAMRRHWFNNEETGYF-KVQKRTATSQNPMTDPGMMTDMLKGNVTNVLPM 493
           ENG++LP+ SF  RR +   EETGY  K Q+R A   NPM DP  MT+MLKGN+ N++PM
Sbjct: 61  ENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPM-DPSQMTEMLKGNMMNMIPM 119

Query: 494 IVIGGWINWMFSGLL 538
           IV+GGWINW FSG +
Sbjct: 120 IVVGGWINWTFSGFV 134



 Score = 31.5 bits (68), Expect = 0.46
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 534 YFTTKVPFPLTLRFKPM 584
           + TT+VPFPLTL+FK M
Sbjct: 133 FVTTRVPFPLTLKFKAM 149


>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +2

Query: 224 HYVSIILSSQKKIELLQVQDSQVMIRARLLRENGKYLPRQSFAMRRHWFNNEETGYFKVQ 403
           HY  +   + +K EL+ V  +++   A+L  +NG+ L    FA  + W  N E  + K+Q
Sbjct: 612 HYFIVRFRNARKAELVAVAVNRL---AKLNMDNGESLKTWRFANMKKWHVNWEIRHLKIQ 668


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +2

Query: 224 HYVSIILSSQKKIELLQVQDSQVMIRARLLRENGKYLPRQSFAMRRHWFNNEETGYFKVQ 403
           HY  +   + +K EL+ V  +++   A+L  +NG+ L    FA  + W  N E  + K+Q
Sbjct: 612 HYFIVRFRNARKAELVAVAVNRL---AKLNMDNGESLKTWRFANMKKWHVNWEIRHLKIQ 668


>U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 14 protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 222 LTIPTKKVMITIGRNTHTRIFGSKRSSAILLK 127
           LT+ +  VMI + RN  T IF SKR +  L K
Sbjct: 283 LTVGSPIVMICVSRNLRTHIFKSKRKNQTLSK 314


>Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical
           protein F56H6.13 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 318 RMVSIYLDSRLQCGDTGSTMRKLV 389
           R +S YL+++ +C D GS MR +V
Sbjct: 136 RFLSFYLNNKSECYDCGSDMRCVV 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,084
Number of Sequences: 27780
Number of extensions: 279702
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)