Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L22
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   219   2e-58
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   218   4e-58
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    31   0.16 
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    29   0.37 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   0.64 
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   1.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   2.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   2.6  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   3.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   6.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   6.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.9  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  219 bits (535), Expect = 2e-58
 Identities = 110/187 (58%), Positives = 134/187 (71%)
 Frame = +1

Query: 13  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 192
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 193 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 372
           D+GNF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 373 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPG 552
           +G  KG K T          +S+   +K+ +R   SKV+  LE QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 553 QCGRADG 573
           Q GR DG
Sbjct: 175 QSGRCDG 181


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  218 bits (533), Expect = 4e-58
 Identities = 110/187 (58%), Positives = 134/187 (71%)
 Frame = +1

Query: 13  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 192
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 193 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 372
           D+GNF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 373 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPG 552
           +G  KG K T          +S+   +K+ +R   SKV+  LE QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 553 QCGRADG 573
           Q GR DG
Sbjct: 175 QSGRCDG 181


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 25   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 198
            RD  +K +  G       K+ +   EL    +N  +  Q+  L+ S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 199  GNFAWGSECSTRKTRI 246
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 370 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGL 498
           PL R+K  +LT  E  +  +  S  T+KK+  + + SK   G+
Sbjct: 569 PLSRRKARQLTALELGVSPEALSSATSKKHNKKNKRSKQRSGV 611


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 316 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 483
           V  DA   ++  E   ++   +KK +KL EA+     K++ +K  KK+   +R S+
Sbjct: 434 VTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSE 489


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 115 WQPGDLTHTSSSYEWAHVC 59
           W PG      SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +1

Query: 106 PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 285
           P  NT + PQ     RSR   T  R+L   +G  +  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 286 RTKTLVKNAIVVVDATPFRQWYE 354
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 318 DNSILYQGFGTHQFIVRGIINNI 250
           +NS+ +Q F +H FI R +IN I
Sbjct: 541 ENSLYHQSFSSHWFISRLLINPI 563


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
 Frame = +1

Query: 28   DHWHKRRATGGKRAPIRKKRKY---ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 198
            D W   +A G   +PIR+ ++Y   +L  P    K      H    R    K R + +  
Sbjct: 758  DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKF-RDNYHKQNKRNREAKERGIGIKV 816

Query: 199  GNFAWGSECSTRKTRIIDVVYNASNN 276
             N    S    RK R +     A NN
Sbjct: 817  -NSELKSAVEIRKARELKEKRLAKNN 841


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 354 FIPLPERCGIHHDNSILYQ 298
           F+P PE C I+H+  I  Q
Sbjct: 477 FLPAPEECNIYHNEHIQVQ 495


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 411  LSLSELGTFLPSEW 370
            LSL+E GTFL  EW
Sbjct: 1554 LSLNECGTFLQKEW 1567


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 211 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 384
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 385 K 387
           +
Sbjct: 310 Q 310


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 361 YLLPLGRKKGAKLTE 405
           Y+LPLGRK   K TE
Sbjct: 492 YILPLGRKTARKCTE 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,315
Number of Sequences: 5004
Number of extensions: 56468
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)