Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L22
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 271 3e-73
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 34 0.062
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 34 0.062
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.19
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.19
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.19
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.19
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.19
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.19
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 31 0.77
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 31 0.77
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 1.0
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 1.0
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 1.0
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical p... 28 5.4
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 5.4
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 28 5.4
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 27 7.2
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 27 9.5
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 271 bits (664), Expect = 3e-73
Identities = 126/187 (67%), Positives = 150/187 (80%)
Frame = +1
Query: 13 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 192
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 193 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 372
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 373 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPG 552
L RKK AKL+E + AI+NKKRS T KKY RQ+ + V+ L EQF+TGRLLA ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180
Query: 553 QCGRADG 573
Q G+A+G
Sbjct: 181 QVGQANG 187
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 34.3 bits (75), Expect = 0.062
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +1
Query: 238 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 408
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 409 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 525
++AI ++ + KK L + + SK E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 34.3 bits (75), Expect = 0.062
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +1
Query: 238 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEA 408
T+I+ + Y A E + K L+ K +I+ + + +S+ + RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 409 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 525
++AI ++ + KK L + + SK E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 181 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 285
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 181 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 285
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 181 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 285
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 181 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 285
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 181 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 285
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 181 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 285
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.77
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 517 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 431
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 30.7 bits (66), Expect = 0.77
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 517 QCGIAPPDHPLPWTGAA-CSGTSSLSFDCV 431
+CG A P +P PW +A C T++ + +C+
Sbjct: 486 KCGCADPRYPKPWKRSAWCDSTNTTTLNCL 515
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 134 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 9
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 134 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 9
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 134 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 9
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 379 RKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 504
+K G A++ I K+++ KTAKKY +++L+++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>Z70307-12|CAA94340.1| 405|Caenorhabditis elegans Hypothetical
protein C39E9.11 protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 382 KKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 504
KK K + EE +K+ +K AKK + +++ K+ GG+++
Sbjct: 79 KKALKKAQKEE----RKKEKKLAKKAMKVEKIPKIGGGIQK 115
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 223 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 345
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 414 FLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTH 283
FL LG LP V I RC HHD + +Y G+G +
Sbjct: 2 FLFPLVLGFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 571 HRRDRTDRADSPHMLTAVQCGIAPPDHPLP 482
H D TDR TA+ G+ PDH P
Sbjct: 172 HHPDPTDRVTGAWQGTAIAAGVTIPDHIQP 201
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 571 HRRDRTDRADSPHMLTAVQCGIAPPDHPLP 482
H D TDR TA+ G+ PDH P
Sbjct: 174 HHPDPTDRVTGAWQGTAIAAGVTIPDHIQP 203
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 571 HRRDRTDRADSPHMLTAVQCGIAPPDHPLP 482
H D TDR TA+ G+ PDH P
Sbjct: 174 HHPDPTDRVTGAWQGTAIAAGVTIPDHIQP 203
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 317 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 469
S + PHLS S K T HS+ + PSS +KPS + + R R + G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 317 SWWMPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AG 469
S + PHLS S K T HS+ + PSS +KPS + + R R + G
Sbjct: 763 SSYSPHLSVSADKDTMSMHSQTSRRPSS---QKPSYSGSYSARSRGGSSTG 810
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,875
Number of Sequences: 27780
Number of extensions: 332723
Number of successful extensions: 980
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -