Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L20
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    69   6e-13
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   3.3  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   4.3  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   7.5  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   10.0 

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 68.5 bits (160), Expect = 6e-13
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
 Frame = +1

Query: 34  FIAPIIQDNPTGWGPCEMPDQFRDMPYQPFSKGDRLGKISDWTVVQDK------------ 177
           F  P +    + WGP E      D+PY PFSKGDRLGKI+DW+V Q K            
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPKDGREQRGRQGAF 64

Query: 178 --KYQNKYASQ-FGAGSSYAYFHDEDESTFHLVDTTRVQK 288
             +++++Y +  +GA S + Y H EDES+F ++D   V +
Sbjct: 65  AGRFRDQYQTYGYGASSIFGYQHSEDESSFSVIDRGSVNR 104


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 300 TRTCSWTARSWR*RCTY 350
           TR CSW  R W  + TY
Sbjct: 334 TRNCSWIGRIWSIKLTY 350


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 96  LIRHFAWPPSCRVVLNYWRY 37
           L+  F++ P CR VL +W++
Sbjct: 57  LVECFSFSPFCRPVLEFWKW 76


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 110 GISLN*SGISHGPHPVGLS 54
           G  L  S  SHGPH VGL+
Sbjct: 237 GAQLTLSDDSHGPHQVGLN 255


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 100 RDMPYQPFSKGDRLGKISDWTVVQDKKYQNKYASQFGAGSSYAYFHDED 246
           RD+       G+       WT V  +    KY   F +GSS+   HD++
Sbjct: 456 RDLALDSDIIGNSPPSFDSWTAVPYQAPPPKYDDIFQSGSSHDENHDDN 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,185
Number of Sequences: 5004
Number of extensions: 45893
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)