Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L20
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0140 - 27982037-27983794                                         39   0.002
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    32   0.36 

>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
 Frame = +1

Query: 34  FIAPIIQDNPTGWGPCEM---PDQF------RDMPYQPFSKGDRLGKISDWT 162
           F   ++  NP GWGP +    P           +P+ PFS+ D+LG+I+DWT
Sbjct: 3   FDVGVVAFNPEGWGPPDTAPAPASLGGGAAAASIPFAPFSRSDKLGRIADWT 54



 Score = 33.9 bits (74), Expect = 0.088
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 409 GQRGAPMKIRDASVTVRPTWVTIEDMDFPRLAKLSLPGIKDGEDIVCCG 555
           G RG       +SV ++P W   E + F    KLS       ED++ CG
Sbjct: 152 GFRGNQSSSAKSSVDIQPDWTMREQIPFANFTKLSFSVADQPEDLLLCG 200


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 185 RISMHHSLVPVLHMPISMMKMKAPSTWWIQLECRNR 292
           R  +HHS VP+ H P S    ++PS  W+    R R
Sbjct: 188 RDMLHHSPVPLFHSPASSPASRSPSASWLAGRERER 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,963
Number of Sequences: 37544
Number of extensions: 332739
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)