Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L20
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.22 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   4.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 439 DASVTVRPTWVTIEDMDFPRLAKLSLPGIKDGEDI 543
           D ++ V   W+   D + P+LA  +   IK  E+I
Sbjct: 583 DPNLAVYGVWINCLDPNLPKLALFATKDIKQNEEI 617


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 300 TRTCSWTARSWR 335
           T+ C+W AR W+
Sbjct: 298 TKPCTWAARPWQ 309


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 300 TRTCSWTARSWR 335
           T+ C+W AR W+
Sbjct: 298 TKPCTWAARPWQ 309


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 300 TRTCSWTARSWR 335
           T+ C+W AR W+
Sbjct: 298 TKPCTWAARPWQ 309


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 168 HNCPVTYFA*AVSFTKRLVGHIP 100
           ++C     A  VS T+RLV H+P
Sbjct: 683 YSCVARNLAAEVSHTQRLVVHVP 705



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 545  TMSSPSLMPGKESLASRGKSISSIVTQVGRTVTEASRIFIG 423
            T S  S M  ++SL  RG+S  S +  +   ++ A   F+G
Sbjct: 1821 TSSDISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETTFVG 1861


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 403 SCRVCGHVACSK 368
           +C++CG V CSK
Sbjct: 7   TCQLCGKVLCSK 18


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 376 KQRDRKLGKRWGQRGAPMKIRDASVTVRPTWVTIEDMDFP 495
           K++ R L    G     ++I     T+RP + T++  ++P
Sbjct: 93  KKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEYP 132


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 545  TMSSPSLMPGKESLASRGKSISSIVTQVGRTVTEASRIFIG 423
            T S  S M  ++SL  RG+S  S +  +   ++ A   F+G
Sbjct: 1825 TSSDISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETTFVG 1865


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 556 YHSTQCPHHL 527
           YH  Q PHHL
Sbjct: 5   YHVAQLPHHL 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,151
Number of Sequences: 438
Number of extensions: 3025
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)