Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L19
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 254 3e-68
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 252 1e-67
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 250 7e-67
03_05_0771 - 27588194-27588877 31 0.56
03_05_0772 - 27591175-27591864 29 2.3
03_05_0770 - 27583855-27584544 29 3.0
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 4.0
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 4.0
03_02_0697 - 10487661-10488342,10490474-10490556 28 5.2
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 9.2
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 27 9.2
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 9.2
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 27 9.2
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 254 bits (623), Expect = 3e-68
Identities = 120/186 (64%), Positives = 149/186 (80%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 426
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 427 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDID 606
CIGFT + ++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+ I K+I+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIE 198
Query: 607 KACHGI 624
KA I
Sbjct: 199 KATSSI 204
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 252 bits (618), Expect = 1e-67
Identities = 120/186 (64%), Positives = 148/186 (79%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 426
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 427 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDID 606
CIGFT + ++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+ I K+I+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIE 198
Query: 607 KACHGI 624
KA I
Sbjct: 199 KATSSI 204
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 250 bits (612), Expect = 7e-67
Identities = 117/186 (62%), Positives = 150/186 (80%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 426
+++RK RL AEDVQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 427 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDID 606
CIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+I+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIE 198
Query: 607 KACHGI 624
K+ I
Sbjct: 199 KSTSSI 204
>03_05_0771 - 27588194-27588877
Length = 227
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = -2
Query: 489 GMLSVACLALAERILVGETDAENT*DISVSGLN--VNVGFNQCLP-------FLYHPSEF 337
G++ V L +L+ TDA+ D V+ LN V V + C P FL+
Sbjct: 9 GLVFVVLLLQQAPVLIRATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIA 68
Query: 336 ISGEVHAVEIAENITSLDI 280
G+V+A N+T LD+
Sbjct: 69 TGGDVNANPNGSNVTELDV 87
>03_05_0772 - 27591175-27591864
Length = 229
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Frame = -2
Query: 516 HFFPDCADLGMLSVACLALAERILVGETDAENT*DISVSGLN--VNVGFNQCLP------ 361
H F A G++ V L +L+ TDA+ D V+ L+ V V + C P
Sbjct: 3 HSFKTIA-AGVVIVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGD 61
Query: 360 -FLYHPSEFISGEVHAVEIAENITSLDI 280
FL+ G+V+A N+T LD+
Sbjct: 62 EFLFSSKIATGGDVNANPNGSNVTELDV 89
>03_05_0770 - 27583855-27584544
Length = 229
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = -2
Query: 489 GMLSVACLALAERILVGETDAENT*DISVSGLN--VNVGFNQCLP-------FLYHPSEF 337
G++ V L +L+ TDA+ D V+ L+ V V + C P FL+
Sbjct: 11 GVVFVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIA 70
Query: 336 ISGEVHAVEIAENITSLDI 280
G+V+A N+T LD+
Sbjct: 71 TGGDVNANPNGSNVTELDV 89
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 92 GTMLKRRPCSPRDKWAPPLSIAP 160
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +1
Query: 484 HTQVRAIRKKMCEIITRDVTSSELREVVNKLIP---DSIAKDID 606
H Q + RK++ ++ + TSS+LRE+ ++L+ ++ +KD+D
Sbjct: 1956 HMQSQTKRKQIDHLMELNSTSSQLREIFSELLHHLLNTFSKDVD 1999
>03_02_0697 - 10487661-10488342,10490474-10490556
Length = 254
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 425 SASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSR 532
SA+ + I S+N+ HA+ S P S KC+ SR
Sbjct: 203 SAAKTTAAISSSNSNHASSSAPPPPPSKPKCLWQSR 238
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 272 SLRMSRDVMFSAISTAWTSPLINSDG 349
SL S D+ FS I +AW + SDG
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDG 434
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 272 SLRMSRDVMFSAISTAWTSPLINSDG 349
SL S D+ FS I +AW + SDG
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDG 491
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 277 EDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 384
E +QG LCN +GM T+ LR + W T I N
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYILEN 212
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 199 VFEVSLADLQADS----DAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 366
+ ++++ADL S D +R+ ++ ++ E + N L DKL +V Q
Sbjct: 144 LMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDL----------DKLGGLVAVIQ 193
Query: 367 TLIEANIDVKTTDGYVL 417
L AN +++TT +VL
Sbjct: 194 DLNNANEEIRTTSAWVL 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,613
Number of Sequences: 37544
Number of extensions: 363812
Number of successful extensions: 940
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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