Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L19
         (625 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   296   2e-80
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   296   2e-80
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   280   1e-75
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   269   2e-72
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   225   4e-59
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   148   5e-36
AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-P...    31   1.7  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  296 bits (726), Expect = 2e-80
 Identities = 139/187 (74%), Positives = 160/187 (85%)
 Frame = +1

Query: 64  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 243
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 244 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 423
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 424 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 603
           FCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDI
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 200

Query: 604 DKACHGI 624
           +K+C  I
Sbjct: 201 EKSCQRI 207


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  296 bits (726), Expect = 2e-80
 Identities = 139/187 (74%), Positives = 160/187 (85%)
 Frame = +1

Query: 64  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 243
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 244 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 423
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 424 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 603
           FCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDI
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 200

Query: 604 DKACHGI 624
           +K+C  I
Sbjct: 201 EKSCQRI 207


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  280 bits (687), Expect = 1e-75
 Identities = 135/189 (71%), Positives = 156/189 (82%), Gaps = 2/189 (1%)
 Frame = +1

Query: 64  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADSD 240
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDID 80

Query: 241 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 420
            E SFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LR
Sbjct: 81  PEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLR 140

Query: 421 VFCIGFTNKDTLSQRKTCYAQHTQVRAIRK-KMCEIITRDVTSSELREVVNKLIPDSIAK 597
           VFCIGFT KD  SQRKTCYA  +QVR IR  +M +IIT +V+ ++L+++VNKL  DSIAK
Sbjct: 141 VFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAK 200

Query: 598 DIDKACHGI 624
           DI+K+C  I
Sbjct: 201 DIEKSCQRI 209


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  269 bits (660), Expect = 2e-72
 Identities = 125/168 (74%), Positives = 145/168 (86%)
 Frame = +1

Query: 64  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 243
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 244 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 423
           ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 424 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVV 567
           FCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  225 bits (550), Expect = 4e-59
 Identities = 107/144 (74%), Positives = 122/144 (84%)
 Frame = +1

Query: 193 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 372
           GRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 373 IEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSE 552
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 553 LREVVNKLIPDSIAKDIDKACHGI 624
           L+++VNKL  DSIAKDI+K+C  I
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRI 157


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  148 bits (359), Expect = 5e-36
 Identities = 69/102 (67%), Positives = 84/102 (82%)
 Frame = +1

Query: 319 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVR 498
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 499 AIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIDKACHGI 624
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDI+K+C  I
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRI 102


>AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-PA
           protein.
          Length = 632

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 618 VTRLVDILSDGVRNQLVHDFTKL*TGHIARDDFTHFFPDC 499
           +T L+D++S GV   L+H FT++ T  +    +     DC
Sbjct: 275 MTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,718,888
Number of Sequences: 53049
Number of extensions: 619304
Number of successful extensions: 1633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)