Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L18
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   153   9e-39
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   148   3e-37
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.33 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.3  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   3.0  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   3.0  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   4.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   4.0  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   4.0  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   5.3  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    24   7.0  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   9.3  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  153 bits (371), Expect = 9e-39
 Identities = 69/101 (68%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
 Frame = +1

Query: 10  RNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQLP 189
           RN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASVY+ + +P
Sbjct: 6   RNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIP 65

Query: 190 KLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRD 309
           KLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD
Sbjct: 66  KLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD 106


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  148 bits (358), Expect = 3e-37
 Identities = 67/104 (64%), Positives = 84/104 (80%), Gaps = 1/104 (0%)
 Frame = +1

Query: 10  RNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQLP 189
           RN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASVY+ + +P
Sbjct: 6   RNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIP 65

Query: 190 KLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMAR 318
           K+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R
Sbjct: 66  KIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKR 109


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 76  RCVPKDKAIKKFVIRNIVEAAAVRDI 153
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 123 YC*SCRCEGHKRSLSIYFIPTSQAVCKTPLL 215
           +C +C    H+    I F+P  Q  CK  LL
Sbjct: 213 FCDNCNTSVHQNCYGIPFVPEGQWFCKKCLL 243


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 197 MQNSTTACHARSI-AKWCVTDLRRTGGSVHHPRATSQG 307
           M+ + +   AR +  KW + + RR  GSV   RA   G
Sbjct: 1   METNGSFSGARLVDGKWIIPESRRKDGSVRRERAVKPG 38


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 247  APLCYGSRMTRSSGVLHTAWEVGMKYILRLRL 152
            +P+  G +MT S   + T ++ G +    LRL
Sbjct: 954  SPMSQGDKMTSSESTVSTTYDFGFEAAYNLRL 985


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 274 IRTPPKSNFPRDMAR 318
           IRTP KS FP+D A+
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +1

Query: 85  PKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKK 264
           P+ + + K  + NI  + +V  ++    +T+ +  ++Y  LH  VS      VVRN   +
Sbjct: 648 PESEYLLKQCLSNISLSNSVISLSNPKFWTN-ERGEVYGILHIQVSIDGDLNVVRNEVFR 706

Query: 265 DRRIRTPPKSNFPRDMARPQN 327
              I  P   +      RP N
Sbjct: 707 KLSIAVPNLKHICIQSERPNN 727


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 214 CVSCAIHSKVVRNRSKKDRRIRTPPKS 294
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 87  QRQSHQKVCDQEYC*SCRCEGHKRSLSIYFIPTSQAV 197
           ++QSH ++   + C S    GH    ++YF  + Q +
Sbjct: 51  RQQSHSRITISKQCVSWIGNGHAAETTLYFPASHQQI 87


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 291 LGWCTDPPVLLRSVTHHFAMDRA*HAVVEFCIQLGK 184
           +G     PV     T H ++++  HAV+  C +L +
Sbjct: 136 VGQILQVPVFPEESTFHLSIEQYLHAVLSLCSELAR 171


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 191 SCMQNSTTACHARSIAKWCVTDL 259
           SCM+N   A   R I K+  TDL
Sbjct: 62  SCMRNEEPASKQREIEKFLRTDL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,394
Number of Sequences: 5004
Number of extensions: 26994
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)