Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L18
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 150 3e-37
06_02_0037 - 10856616-10856915,10857527-10860238 28 2.9
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 5.0
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 27 5.0
11_01_0564 - 4447078-4448519,4449465-4449711 27 6.6
11_04_0087 + 13368700-13369051,13369491-13369580,13370685-133709... 26 8.7
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 26 8.7
01_01_0173 - 1489798-1489851,1490024-1491535,1491751-1492146 26 8.7
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 150 bits (364), Expect = 3e-37
Identities = 66/105 (62%), Positives = 85/105 (80%)
Frame = +1
Query: 10 RNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQLP 189
RNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ EA V+ + LP
Sbjct: 6 RNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLP 65
Query: 190 KLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMARPQ 324
KLYAK+H+CVSCAIH+ +VR RS+++RR R PP+ F R + P+
Sbjct: 66 KLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109
>06_02_0037 - 10856616-10856915,10857527-10860238
Length = 1003
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 200 AYSLGSWNEVYTEASFMSLTAAASTIFLITNFLMALSL 87
AY+ GSW ++ S L AA + ++T + SL
Sbjct: 525 AYAAGSWRDIGASLSIFVLVAAIIVLLVVTYIVSCKSL 562
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 108 LFDGFVFGHAASAVGAPDGLNVATAVFSASS 16
L D H+ S V +G N++TA+ SASS
Sbjct: 1761 LLDSKTHEHSTSFVRIDEGKNLSTAILSASS 1791
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 27.1 bits (57), Expect = 5.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 352 NKLPTSSVHSVDAPYPLGSCSWVVYGSACPS*ICYAPLCYGSRMTRSSG 206
NKLP + V A + L S + YGS PS + A L + T S G
Sbjct: 567 NKLPLRTCRGVIAEFQLPSDTIETYGSQSPSILSDAWLAFQGPRTVSIG 615
>11_01_0564 - 4447078-4448519,4449465-4449711
Length = 562
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +2
Query: 185 FPSCMQNSTTACHARSIAKWCVTDLRRTGGSVHHPR 292
F CM+ + KW V D+ GGS P+
Sbjct: 334 FSKCMEAMENCLRDAKVDKWSVDDVVLVGGSTRIPK 369
>11_04_0087 +
13368700-13369051,13369491-13369580,13370685-13370988,
13371374-13371656
Length = 342
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 219 HAVVEFCIQLGKLE*SIY*GFVYVPHSGSFNNIPDHKLFD-GFVFGHAASAVGAPDGLNV 43
H +V +C+Q KL GF + P +N+ K+ F FG +GA G+N
Sbjct: 75 HVIVSYCVQR-KL------GFGFTP-----SNLSPAKIMKLSFSFGETVIQIGAKSGVNA 122
Query: 42 ATAVFSAS 19
++ S S
Sbjct: 123 GSSSISIS 130
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 164 QYILHSNFPSCMQ----NSTTACHARSIAKWCVTDLRRTGGSV--HHPR 292
+Y+ HS FP C + + +A+++ K DL TGG + H PR
Sbjct: 1143 EYLGHSTFPDCCKVLCTQTDNLYNAKNMLKSNNLDLSSTGGKLPPHGPR 1191
>01_01_0173 - 1489798-1489851,1490024-1491535,1491751-1492146
Length = 653
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 339 LPLYILWTRHIPWEVALGWCTDPPV 265
+PLY+ W H+P L W DP V
Sbjct: 166 VPLYVTWENHLPDAHILPW--DPTV 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,689
Number of Sequences: 37544
Number of extensions: 203051
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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