Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L18
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   155   1e-38
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    33   0.069
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    33   0.069
AC024812-7|AAF59548.2|  419|Caenorhabditis elegans Hypothetical ...    28   2.0  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   2.6  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF068714-8|AAC17809.2|   86|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  155 bits (376), Expect = 1e-38
 Identities = 69/93 (74%), Positives = 77/93 (82%)
 Frame = +1

Query: 10  RNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQLP 189
           RN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI +AS YT + LP
Sbjct: 6   RNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALP 65

Query: 190 KLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 288
           KLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 66  KLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 33.1 bits (72), Expect = 0.069
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +1

Query: 43  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQL-PKLYAKLHYCV 219
           H+K ++C NC+     +K+++  +IR+  E A   ++ +A      +L P    K H   
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 220 SCAIHSKVV-RNRSKKDRRIRTPPKS 294
            C    K++ + R  K  ++++ P S
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 33.1 bits (72), Expect = 0.069
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +1

Query: 43  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQL-PKLYAKLHYCV 219
           H+K ++C NC+     +K+++  +IR+  E A   ++ +A      +L P    K H   
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 220 SCAIHSKVV-RNRSKKDRRIRTPPKS 294
            C    K++ + R  K  ++++ P S
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSS 282


>AC024812-7|AAF59548.2|  419|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.8 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 324 LWTRHIP-WEVALGWCTDPPVLLRSVTHHFAMDRA*HAVVEF 202
           +W+RH+  +     +C  P +   S+  HFA + +  A+VEF
Sbjct: 27  IWSRHLQAFPFKCAYCDFPALSAISLMDHFAQNHSDVAIVEF 68


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 188 PSCMQNSTTACHARSIAKWCVTDLRRTGGSVHHPRA 295
           PS   + T  C+  S  K C  +   TGGSV  PR+
Sbjct: 113 PSWKCDGTNDCYDGSDEKDCFVEFDATGGSVSAPRS 148


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 46  VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQ 183
           V   R  N   C+   K IK+F ++ I  AA  R + E  + T+ Q
Sbjct: 129 VSVYRTMNEGNCINASKVIKEFRVKTIRLAACSRSLEE-KIVTNIQ 173


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 121 NIVEAAAVRDINEASVYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKK 264
           N++    +RD N   +   ++L  +   L YC+   +++  V NR  K
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRCVK 129


>AF068714-8|AAC17809.2|   86|Caenorhabditis elegans Hypothetical
           protein B0348.2 protein.
          Length = 86

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 304 LGSCSWVVYGSACPS*ICYAPLCYGSRMTRSSGVLH 197
           LG+C WVV+   C   + + P+CY      S   +H
Sbjct: 38  LGACWWVVFIIGC---LLFWPICYWLCCDSSKDTMH 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,197,650
Number of Sequences: 27780
Number of extensions: 159022
Number of successful extensions: 538
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)