Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L17
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.2  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 314 PKVRVIQFTCLK*AIFIIKKVMC*VTCGFLINLNA 210
           P +  I  T  +  IFII  V+    C F+I LN+
Sbjct: 487 PSIYFISKTLAESPIFIIIPVILTSVCYFMIGLNS 521


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 314 PKVRVIQFTCLK*AIFIIKKVMC*VTCGFLINLNA 210
           P +  I  T  +  IFII  V     C F+I LN+
Sbjct: 487 PSIYFISKTLAESPIFIIIPVTLTSVCYFMIGLNS 521


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 425 VCIVDSNWGVNGGQVTGREDGGICFDCTMLSGTLTSL-YLVPIKNIP 562
           V   D  W   G ++  +ED  +C   T+     T    L+ + NIP
Sbjct: 397 VATFDETWAKLGLEINHKEDFRVCLVFTLTGPFFTFCNVLMEMWNIP 443


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,043
Number of Sequences: 336
Number of extensions: 2328
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)