Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L17
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   4.5  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   5.9  

>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 13  DHAFYFAFYCKNRECFLLLNP 75
           DH F+  + CKN +  L+L P
Sbjct: 369 DHRFWIKYSCKNTQTTLILRP 389


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 454 KWGASDGPRGWWDMFRLYYAIRHI--DVTLSCSN 549
           K    D  R WWDM  L+ A R +   +TL   N
Sbjct: 13  KLSQMDFERAWWDMANLFRAPRRVYRSITLRKQN 46


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 446 WGVNGGQVTGREDGGICFDCTMLSG 520
           WG  GG + G   GG+ +D  + +G
Sbjct: 531 WGAWGGTIGGGIAGGLIYDLVIFTG 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,426
Number of Sequences: 5004
Number of extensions: 38153
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)